Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16i13
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   5.5  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   7.3  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   7.3  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 100 IHK*EKSYITDVFSRLGYP 156
           +HK  +S   D++SR+G+P
Sbjct: 354 VHK-TQSQTIDIYSRIGFP 371


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -3

Query: 563 NYIVIMILSIQT 528
           NYIVI+ILS+ T
Sbjct: 4   NYIVILILSLLT 15


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -3

Query: 563 NYIVIMILSIQT 528
           NYIVI+ILS+ T
Sbjct: 4   NYIVILILSLLT 15


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,217
Number of Sequences: 438
Number of extensions: 4686
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)