Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16i06
         (161 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    23   4.1  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    23   4.1  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    23   5.4  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    22   9.5  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    22   9.5  

>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 87  RCVVQSVLKIFYKAVNLIK 31
           RC+++  + IF+K + L K
Sbjct: 245 RCIIKECVDIFFKCIPLFK 263


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 91  LTMCGPKRVEDILQGCQPYKTIN*NG 14
           LT  GPK     LQG   + +++ NG
Sbjct: 352 LTSTGPKNTSKQLQGLVQFSSVSPNG 377


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 31  FYKVDSLVEYLQHALDHTSLV 93
           FY +DSL+     A+ HT L+
Sbjct: 506 FYNIDSLLHQQNDAVKHTFLL 526


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 97  VKLTMCGPKRVEDILQGCQPYK 32
           V + MCGPK +  + + C   K
Sbjct: 488 VSILMCGPKELSQLKRLCYRLK 509


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 31  FYKVDSLVEYLQHALDHTSLVL 96
           FY ++S++EY    +  TSL L
Sbjct: 101 FYLINSVMEYSPKIISFTSLFL 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 568,190
Number of Sequences: 5004
Number of extensions: 6579
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)