Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16h23
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    33   0.041
SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.2  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.5  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    27   2.7  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.7  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    27   3.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   4.7  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    26   4.7  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   4.7  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   8.1  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   8.1  

>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 33.1 bits (72), Expect = 0.041
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +2

Query: 329 LCRMRTTVHYCCPFARSTFPLPQVPGIISLNVL----FYRMGFCLDVLIRDLSFRFVFRY 496
           L +++T+++Y    A    P    P + S+ ++    FY   FC    ++   F    R 
Sbjct: 81  LSQLQTSINYALALAARANPETYKPAVQSVQLVKGIPFYGYSFCFQKFLKICLFSPKNRD 140

Query: 497 QIVNIFNAKSIFHNIEQVY 553
           ++V++F   +I + + QVY
Sbjct: 141 RLVDLFRQGAILNKVIQVY 159


>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 142

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +1

Query: 247 HSSWSEAI-CRDFQKFGNVSRTSGDCSQFVSNAYDCSLLLPICTLDVSTPTGPRNNFSQC 423
           HS WS    C +  +FG ++   G  SQF   A  C+     C L  S  T P   FS+ 
Sbjct: 72  HSFWSLIEGCLEALQFGLLAILQGLFSQFAWEACSCTF---ACMLLTSERTEPSYPFSEI 128

Query: 424 ALLSDGFL 447
             +S G L
Sbjct: 129 TEVSRGGL 136


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 194 STPQAPNEYLIRNRINSGTLHGLKRFVAIFKSLAMYLG 307
           STP+   E+++ +R+N G  + L +    +K + M  G
Sbjct: 189 STPEGAREFVVPSRLNPGKFYALPQSPQQYKQILMASG 226


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 20/89 (22%), Positives = 38/89 (42%)
 Frame = -2

Query: 496 ITKHEPKTKVSDKDIQTETHPIEEHIERNYSWDLWEWKRRACKWATIVNSRTHSTQTDYS 317
           + KH  +  V  +DI     P EE++    +   WE  +   +    +++ T   + DY 
Sbjct: 268 LNKHPHEIDVKFEDISISLDPREEYVMIEATSGYWEAYKHVLRSLQRLSASTFPMK-DYL 326

Query: 316 HLRSEIHCQTFENRDKSLQTMKSAGINTI 230
                +HC++ +   K +Q      IN+I
Sbjct: 327 -----VHCKSNQETAKHIQNNPRIRINSI 350


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 202 SSPKRIPYSESY*FRHSSWSEAICRDFQKFGNVSRTSGDCSQFVSNAYDC 351
           SSP   P+ +SY  +    +E +  + QK   V +T G      +   DC
Sbjct: 166 SSPSSDPFFDSYLEQAFEKAERLANEQQKISKVEKTFGTLDSIGTEQDDC 215


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = +3

Query: 24  GPAYKTGTYSSD----REPVLVDSSRLYPAHGHVHTETVCSFFFSTLCSTPKFIA 176
           GP +   TY S+    R  ++VD  +  P H H++     SF  +   S  K +A
Sbjct: 125 GPTFPGFTYDSEDGARRASIIVDGMQSSPVHTHIYFNGGGSFLETENYSNVKVVA 179


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 589 EVLEYARNNPHVINLLNIVEDAFSVKDID 503
           E+LE+     HV N+L + +D  S+  +D
Sbjct: 499 EILEHLNKKEHVFNILTVFKDLQSLNVLD 527


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 497  QIVNIFNAKSIFHNIE--QVYNMGIVSRVFQYFIHVPLRVFAEFGRHFDTTESIT 655
            +++N+    S  H+++    Y +G  + + QY IH+ L  F   G +    E +T
Sbjct: 1669 KLLNMMGKSSTTHSLKLLSTYMVGFSTSIIQYIIHLILLEFDFNGNNKKQKEYVT 1723


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/52 (19%), Positives = 21/52 (40%)
 Frame = +3

Query: 423 CSSIGWVSVWMSLSETLVLGSCFVIRLSISLTLKASSTILSRFITWGLFLAY 578
           C S G    W+     L+  +  +   ++   +   S+ ++ F TW   L +
Sbjct: 111 CRSFGRRKTWVVPCMLLISSTLLLFSYNVDTWISKGSSYINSFTTWSFLLVF 162


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +2

Query: 380 TFPLPQVPGIISLNVLFYRMGFCLDVLIRDLSFRFVFRYQIVNIFNAKSIFHN 538
           TF +PQV G   LN+     GF + V   + + RF+  + + ++ N  +++ N
Sbjct: 270 TFDVPQVSGSCELNLHLDTSGFPITVEGVNGTGRFIL-FNLSSVANDSTVYSN 321


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +2

Query: 380 TFPLPQVPGIISLNVLFYRMGFCLDVLIRDLSFRFVFRYQIVNIFNAKSIFHN 538
           TF +PQV G   LN      GF + V   + + RF+  + + ++ N  +++ N
Sbjct: 350 TFDVPQVSGSCELNFHLDTSGFPITVEGVNGTGRFIL-FNLSSVANDSTVYSN 401


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 292  QTFENRDK-SLQTMKSAGINTIPNKVFVWGLRGRIGDGQHAMNLGVEHNVEKKKEQT 125
            Q +EN D+ SL T+ S    T  N     GLR    D   A+N  + + VE +  QT
Sbjct: 1309 QLYENFDRLSLSTIMSNNSFTSLN-----GLRTDSADSTDALNSNLNNTVENEANQT 1360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,213,084
Number of Sequences: 5004
Number of extensions: 73391
Number of successful extensions: 238
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)