Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16h23
         (713 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035083-1|AAH35083.2|  622|Homo sapiens chromosome 6 open readi...   100   6e-21
AL049697-1|CAD92567.1|  622|Homo sapiens protein ( Human DNA seq...   100   6e-21
AK098840-1|BAC05430.1|  400|Homo sapiens protein ( Homo sapiens ...   100   6e-21
AK093830-1|BAC04234.1|  505|Homo sapiens protein ( Homo sapiens ...    42   0.003
X97548-1|CAA66150.1|  835|Homo sapiens TIF1beta zinc finger prot...    30   7.2  
U95040-1|AAB51517.1|  835|Homo sapiens hKAP1/TIF1B protein.            30   7.2  
U78773-1|AAB37341.1|  835|Homo sapiens nuclear corepressor KAP-1...    30   7.2  
BC052986-1|AAH52986.1|  753|Homo sapiens TRIM28 protein protein.       30   7.2  
BC004978-1|AAH04978.1|  835|Homo sapiens tripartite motif-contai...    30   7.2  

>BC035083-1|AAH35083.2|  622|Homo sapiens chromosome 6 open reading
           frame 165 protein.
          Length = 622

 Score =  100 bits (239), Expect = 6e-21
 Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 6/173 (3%)
 Frame = -2

Query: 697 PSNMKIGLIKCQGRRYGFCSVKMAAKFSKDPQRYVNEVLEYARNNPHVINLLNIVE--DA 524
           P N  IG++K + + Y F S   A  F+++P+ Y++ V E A+ N  +I LL + +  + 
Sbjct: 433 PGNPAIGILKYKEKYYTFNSKDAAYSFAENPEHYIDIVREKAKKNTELIQLLELHQQFET 492

Query: 523 F----SVKDIDNLITKHEPKTKVSDKDIQTETHPIEEHIERNYSWDLWEWKRRACKWATI 356
           F     ++D D    K  P TK  +   QT TH +   I R+Y W+ WE +R+A K A +
Sbjct: 493 FIPYSQMRDADKHYIK--PITKC-ESSTQTNTHILPPTIVRSYEWNEWELRRKAIKLANL 549

Query: 355 VNSRTHSTQTDYSHLRSEIHCQTFENRDKSLQTMKSAGINTIPNKVFVWGLRG 197
               THS QTD SHLR E   Q +  +D S Q+M+         ++++ GLRG
Sbjct: 550 RQKVTHSVQTDLSHLRRENCSQVYPPKDTSTQSMREDSTGVPRPQIYLAGLRG 602


>AL049697-1|CAD92567.1|  622|Homo sapiens protein ( Human DNA
           sequence from clone RP3-382I10 on chromosome 6q14.3-15
           Contains a novel gene, a TAF13 RNA polymerase II, TATA
           box binding  ).
          Length = 622

 Score =  100 bits (239), Expect = 6e-21
 Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 6/173 (3%)
 Frame = -2

Query: 697 PSNMKIGLIKCQGRRYGFCSVKMAAKFSKDPQRYVNEVLEYARNNPHVINLLNIVE--DA 524
           P N  IG++K + + Y F S   A  F+++P+ Y++ V E A+ N  +I LL + +  + 
Sbjct: 433 PGNPAIGILKYKEKYYTFNSKDAAYSFAENPEHYIDIVREKAKKNTELIQLLELHQQFET 492

Query: 523 F----SVKDIDNLITKHEPKTKVSDKDIQTETHPIEEHIERNYSWDLWEWKRRACKWATI 356
           F     ++D D    K  P TK  +   QT TH +   I R+Y W+ WE +R+A K A +
Sbjct: 493 FIPYSQMRDADKHYIK--PITKC-ESSTQTNTHILPPTIVRSYEWNEWELRRKAIKLANL 549

Query: 355 VNSRTHSTQTDYSHLRSEIHCQTFENRDKSLQTMKSAGINTIPNKVFVWGLRG 197
               THS QTD SHLR E   Q +  +D S Q+M+         ++++ GLRG
Sbjct: 550 RQKVTHSVQTDLSHLRRENCSQVYPPKDTSTQSMREDSTGVPRPQIYLAGLRG 602


>AK098840-1|BAC05430.1|  400|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25974 fis, clone TST06804. ).
          Length = 400

 Score =  100 bits (239), Expect = 6e-21
 Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 6/173 (3%)
 Frame = -2

Query: 697 PSNMKIGLIKCQGRRYGFCSVKMAAKFSKDPQRYVNEVLEYARNNPHVINLLNIVE--DA 524
           P N  IG++K + + Y F S   A  F+++P+ Y++ V E A+ N  +I LL + +  + 
Sbjct: 211 PGNPAIGILKYKEKYYTFNSKDAAYSFAENPEHYIDIVREKAKKNTELIQLLELHQQFET 270

Query: 523 F----SVKDIDNLITKHEPKTKVSDKDIQTETHPIEEHIERNYSWDLWEWKRRACKWATI 356
           F     ++D D    K  P TK  +   QT TH +   I R+Y W+ WE +R+A K A +
Sbjct: 271 FIPYSQMRDADKHYIK--PITKC-ESSTQTNTHILPPTIVRSYEWNEWELRRKAIKLANL 327

Query: 355 VNSRTHSTQTDYSHLRSEIHCQTFENRDKSLQTMKSAGINTIPNKVFVWGLRG 197
               THS QTD SHLR E   Q +  +D S Q+M+         ++++ GLRG
Sbjct: 328 RQKVTHSVQTDLSHLRRENCSQVYPPKDTSTQSMREDSTGVPRPQIYLAGLRG 380


>AK093830-1|BAC04234.1|  505|Homo sapiens protein ( Homo sapiens
           cDNA FLJ36511 fis, clone TRACH2001249. ).
          Length = 505

 Score = 41.5 bits (93), Expect = 0.003
 Identities = 19/54 (35%), Positives = 32/54 (59%)
 Frame = -2

Query: 697 PSNMKIGLIKCQGRRYGFCSVKMAAKFSKDPQRYVNEVLEYARNNPHVINLLNI 536
           P N  IG++K + + Y F S   A  F+++P+ Y++ V E A+ N  +I LL +
Sbjct: 433 PGNPAIGILKYKEKYYTFNSKDAAYSFAENPEHYIDIVREKAKKNTELIQLLEL 486


>X97548-1|CAA66150.1|  835|Homo sapiens TIF1beta zinc finger protein
           protein.
          Length = 835

 Score = 30.3 bits (65), Expect = 7.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 436 PIEEHIERNYSWDLWEWKRRACKWATIVNSRTHSTQT 326
           P+E H E  + WDL  W + A  +  IV  R  +  T
Sbjct: 382 PVEPHGEMKFQWDLNAWTKSAEAFGKIVAERPGTNST 418


>U95040-1|AAB51517.1|  835|Homo sapiens hKAP1/TIF1B protein.
          Length = 835

 Score = 30.3 bits (65), Expect = 7.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 436 PIEEHIERNYSWDLWEWKRRACKWATIVNSRTHSTQT 326
           P+E H E  + WDL  W + A  +  IV  R  +  T
Sbjct: 382 PVEPHGEMKFQWDLNAWTKSAEAFGKIVAERPGTNST 418


>U78773-1|AAB37341.1|  835|Homo sapiens nuclear corepressor KAP-1
           protein.
          Length = 835

 Score = 30.3 bits (65), Expect = 7.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 436 PIEEHIERNYSWDLWEWKRRACKWATIVNSRTHSTQT 326
           P+E H E  + WDL  W + A  +  IV  R  +  T
Sbjct: 382 PVEPHGEMKFQWDLNAWTKSAEAFGKIVAERPGTNST 418


>BC052986-1|AAH52986.1|  753|Homo sapiens TRIM28 protein protein.
          Length = 753

 Score = 30.3 bits (65), Expect = 7.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 436 PIEEHIERNYSWDLWEWKRRACKWATIVNSRTHSTQT 326
           P+E H E  + WDL  W + A  +  IV  R  +  T
Sbjct: 300 PVEPHGEMKFQWDLNAWTKSAEAFGKIVAERPGTNST 336


>BC004978-1|AAH04978.1|  835|Homo sapiens tripartite
           motif-containing 28 protein.
          Length = 835

 Score = 30.3 bits (65), Expect = 7.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 436 PIEEHIERNYSWDLWEWKRRACKWATIVNSRTHSTQT 326
           P+E H E  + WDL  W + A  +  IV  R  +  T
Sbjct: 382 PVEPHGEMKFQWDLNAWTKSAEAFGKIVAERPGTNST 418


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,785,323
Number of Sequences: 237096
Number of extensions: 2486459
Number of successful extensions: 9387
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9384
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)