Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16h21
         (326 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   2.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   3.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   3.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    20   8.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    20   8.8  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              20   8.8  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              20   8.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    20   8.8  

>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 7/36 (19%), Positives = 18/36 (50%)
 Frame = -3

Query: 207 IHDTDKLTLLLMARRGFDMQTVNKLRSGVFQQNGNR 100
           I+   K+  +     G D++  + ++ G+F +N  +
Sbjct: 23  INKLRKIESVCAEENGIDLKKADDVKKGIFDKNDEK 58


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 234 NFLRTKAPIIHDTDKLTLLL 175
           +FLRT  P  H TD    LL
Sbjct: 143 SFLRTVPPYSHQTDVWVELL 162


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +3

Query: 156 QTHVSPSATMSVCQC 200
           +  +SP++T++VC C
Sbjct: 92  ECELSPNSTIAVCVC 106


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 141 NKLRSGVFQQNGNRKNHAK 85
           N  R    +QNGNR+N  K
Sbjct: 461 NDNRQNDNKQNGNRQNDNK 479


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 213 PIIHDTDKLTLLLMARRGFDMQTVNKL 133
           P++ D  +  L    RRGFD   V+ L
Sbjct: 199 PVVLDDMQNVLRFWLRRGFDGFRVDAL 225


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 156 DMQTVNKLRSGVFQQNGNRKNHAKVD 79
           D+Q + K  SG+ QQ  +  N    D
Sbjct: 28  DVQEICKTESGIDQQTVDDINEVNFD 53


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 156 DMQTVNKLRSGVFQQNGNRKNHAKVD 79
           D+Q + K  SG+ QQ  +  N    D
Sbjct: 28  DVQEICKAESGIDQQTVDDINEVNFD 53


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 213 PIIHDTDKLTLLLMARRGFDMQTVNKL 133
           P++ D  +  L    RRGFD   V+ L
Sbjct: 199 PVVLDDMQNVLRFWLRRGFDGFRVDAL 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,666
Number of Sequences: 438
Number of extensions: 1284
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)