Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16h19
         (448 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC039312-1|AAH39312.1|  872|Homo sapiens armadillo repeat contai...    29   9.5  
AL139815-2|CAH72189.1|  875|Homo sapiens novel protein protein.        29   9.5  
AK098711-1|BAC05389.1|  368|Homo sapiens protein ( Homo sapiens ...    29   9.5  

>BC039312-1|AAH39312.1|  872|Homo sapiens armadillo repeat
           containing 3 protein.
          Length = 872

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 11/44 (25%), Positives = 27/44 (61%)
 Frame = -2

Query: 249 ILDENQHVNPRHVLTSRADTRERNVTPKRGMKGNPNVREEDDII 118
           I D+++  + R+ + S++ T+E+     +G K    V+EE++++
Sbjct: 657 IEDKSEPASGRNTVLSKSATKEKGWRKSKGKKEEEKVKEEEEVM 700


>AL139815-2|CAH72189.1|  875|Homo sapiens novel protein protein.
          Length = 875

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 11/44 (25%), Positives = 27/44 (61%)
 Frame = -2

Query: 249 ILDENQHVNPRHVLTSRADTRERNVTPKRGMKGNPNVREEDDII 118
           I D+++  + R+ + S++ T+E+     +G K    V+EE++++
Sbjct: 660 IEDKSEPASGRNTVLSKSATKEKGWRKSKGKKEEEKVKEEEEVM 703


>AK098711-1|BAC05389.1|  368|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25845 fis, clone TST08751. ).
          Length = 368

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 11/44 (25%), Positives = 27/44 (61%)
 Frame = -2

Query: 249 ILDENQHVNPRHVLTSRADTRERNVTPKRGMKGNPNVREEDDII 118
           I D+++  + R+ + S++ T+E+     +G K    V+EE++++
Sbjct: 153 IEDKSEPASGRNTVLSKSATKEKGWRKSKGKKEEEKVKEEEEVM 196


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,489,467
Number of Sequences: 237096
Number of extensions: 877191
Number of successful extensions: 1686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1686
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)