Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16h12
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   1.1  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   1.1  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   1.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   1.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.7  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   5.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.7  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   7.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.9  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 596 KNXQTREHLLVFFT 555
           KN QTREH L+ FT
Sbjct: 129 KNGQTREHALLAFT 142


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 596 KNXQTREHLLVFFT 555
           KN QTREH L+ FT
Sbjct: 56  KNGQTREHALLAFT 69


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 596 KNXQTREHLLVFFT 555
           KN QTREH L+ FT
Sbjct: 72  KNGQTREHALLAFT 85


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 596 KNXQTREHLLVFFT 555
           KN QTREH L+ FT
Sbjct: 129 KNGQTREHALLAFT 142


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 414 TVILVWV*SAARKSPL 367
           T++LVW  SAA  SP+
Sbjct: 306 TILLVWAISAAIGSPI 321


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 93  TLPLPRHMP 67
           TLPLP+H+P
Sbjct: 503 TLPLPQHLP 511


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 93  TLPLPRHMP 67
           TLPLP+H+P
Sbjct: 418 TLPLPQHLP 426


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 93  TLPLPRHMP 67
           TLPLP+H+P
Sbjct: 737 TLPLPQHLP 745


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 271 CKVTGKCGSVTVRLIPAPRGT 209
           C + G CG +   +   P+GT
Sbjct: 75  CPICGACGDIAHTVKYCPKGT 95


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 84  LPRHMPTSL 58
           LP+H+PTSL
Sbjct: 379 LPKHLPTSL 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,033
Number of Sequences: 438
Number of extensions: 4952
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)