Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16h10
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    31   0.18 
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   5.1  
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    26   5.1  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   8.9  
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.9  

>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 554 RACIKPKSWELEKKLGAKNLSAMPHRVCGDFLYRLYDP 441
           R+C +  + EL  ++  KNL+  PH + GD L   Y P
Sbjct: 258 RSCYRTYTTELTHEIVRKNLAFAPHMLAGDILSPRYCP 295


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 22/93 (23%), Positives = 40/93 (43%)
 Frame = +3

Query: 387 ALANEVIFPKILYKLEHTRIIQSV*KVAANSMRHG*KVFCSQFFFELPTLGLDARPHQIL 566
           A+  ++IF  ILYK  +  II  +     +       +  S     + TL ++      +
Sbjct: 250 AILFQIIFTPILYKTNNNPIILPITVTVCSCW----WLILSTPLCTIVTLPVENHSSDAI 305

Query: 567 FSLLLQEVSDVPFWLFRHSQMLGWFRLSLFSSI 665
            +LL   V +  +  F+H+  +   RL LFS +
Sbjct: 306 LTLLYNSVKE-SYHSFKHAMSISSIRLFLFSRL 337


>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 57  LLWKTDELHNIKHLENNTIQTQTL 128
           +LWK  EL +IK  +N+T++ + L
Sbjct: 38  ILWKCLELQHIKTAQNSTLEQRAL 61


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 526 SQLLGLMHALTKSYSLFCCRK 588
           S L+G+   LTK+++LFC  +
Sbjct: 394 SSLIGVFSNLTKAFALFCANE 414


>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 618 HSQMLGWFRLSLFSSINASSAYYLVRFRCFQM 713
           HS M+ +  +    SI+   AYYL  + CF M
Sbjct: 214 HSIMIQFGFICRQKSISKKIAYYLYSYECFPM 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,089
Number of Sequences: 5004
Number of extensions: 54868
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)