Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16h09
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 28 1.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 4.1
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.1
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.1
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 7.1
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz... 25 7.1
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p... 25 7.1
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 9.4
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 9.4
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 25 9.4
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 25 9.4
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 311 LFNPMTWRLIKSPSIFIEYIKLSSIEYNTEITVCPKMKKPVV 186
L +P+TW +I S I LS N E++ K++KP +
Sbjct: 1079 LVSPLTWTVIDSYEFQQFEIPLSVALVNLEVSETTKLRKPYI 1120
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 473 ITLVDRNNNKTDRRSLNPEQKYYKPGEIETKML 375
IT+++R +NK R P+Q+ P ++E +L
Sbjct: 2286 ITVLNRVSNKLTGRDFKPQQQLDVPSQVEKLIL 2318
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 314 SLFNPMTWRLIKSPSIFIEYIKLSSIEYNTEIT 216
+ N +W +I+ P +F+ +L +I YN + T
Sbjct: 135 NFINAFSWGMIEIPLLFLLRQELCAIHYNLDPT 167
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 524 ANSTESKNHGPESGKVTITLVDRNNNK 444
A S S NHG + + LV R++NK
Sbjct: 28 ALSESSMNHGTPDDSILLDLVSRSDNK 54
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 220 ISVLYSIDESFIYSMKILGDFINL 291
+ VLYSI E+ K+L DF+NL
Sbjct: 144 VYVLYSIAETVDLDNKLLLDFVNL 167
>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 375
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 195 FFHFWAYRYFSIV-FDRRKFYIFDENTWGF 281
F+H Y++ +V Y FD+N WG+
Sbjct: 292 FYHPQVYKHVGVVPLKAINAYDFDDNIWGY 321
>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 392
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -3
Query: 371 FQDAGNPPLYVIVEWKYEASLFNPMTWRLIKSPSIFIEYIKLSSI 237
F+D + V ++WK E +FN T + + +I + I S++
Sbjct: 144 FKDGAFVNVLVAIQWKEEFEIFNNETKKSLPKQTIHVHDISGSAM 188
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -3
Query: 416 QKYYKPGEIETKMLAFQDAGNPPLYVIVEWKYEASLFNPMTWRLIKSPSIF 264
QKY K EI +KML QD ++ I+E++ + + + + IK + F
Sbjct: 496 QKYQKTNEIISKMLNSQDTA---VHRIIEFEDQLARLSSVRNNSIKQSTTF 543
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 470 TLVDRNNNKT-DRRSLNPEQKYYKPGEIETKMLAFQDAGNPPLYVI 336
T D+ ++ +++SLN + + +P E E + ++ N PL +I
Sbjct: 763 TAADKEKSQNHEKKSLNSDNQSLRPLENENQSVSSTQGSNSPLELI 808
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 176 ADC*RQVFSFLGIPLFQYCIRSTKVL 253
A C Q+FS+LG LF I + K L
Sbjct: 341 AQCIEQLFSWLGARLFNIVISNKKYL 366
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 521 NSTESKNHGPESGKVTITLVD 459
+ST+S GPE K T+ +VD
Sbjct: 388 SSTKSSKEGPEEEKETLRMVD 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,436
Number of Sequences: 5004
Number of extensions: 58500
Number of successful extensions: 160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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