Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16h09
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0068 + 5390004-5390425,5390517-5390949                           28   5.6  
02_03_0236 + 16717320-16717496,16718082-16718240,16719410-167194...    28   5.6  
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    28   7.4  
08_01_0298 - 2406254-2406322,2406444-2406541,2408652-2408769,240...    27   9.7  

>03_02_0068 + 5390004-5390425,5390517-5390949
          Length = 284

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 320 RTSIQLLRTEGGYRHLGKPAFSFQFLR 400
           RT+++ L+TEG   HL  P+   Q LR
Sbjct: 252 RTTVEFLQTEGHLPHLSAPSLLAQVLR 278


>02_03_0236 +
           16717320-16717496,16718082-16718240,16719410-16719472,
           16720041-16720205,16721140-16721217,16721318-16721428,
           16721516-16721632,16721713-16721808,16722592-16722662,
           16722780-16723011
          Length = 422

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = -2

Query: 294 VEINKIPKYFHRIY----KTFVDRIQY*NNGMPKNEKTCRQQSANGHENEILQVLRKLNE 127
           +E++++  +FH++     K F+ R +     +   +K+CR       E+E L++ RKL +
Sbjct: 223 LEVSRLEIFFHQLSMYEEKIFLKRYELEQESL---KKSCRDVLREASESERLELSRKLED 279

Query: 126 PHYNSNAIVNLLSL 85
             +N     + L L
Sbjct: 280 RFFNEERPYDKLRL 293


>03_03_0090 + 14367033-14367279,14367402-14368205,14368314-14370039,
            14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -2

Query: 201  EKTCRQQSANGHENEILQVLRKL--NEPHYNSNAIVNLLS 88
            +K+C QQ A G   +ILQ++  L  +E + N+  IVNL S
Sbjct: 934  KKSCLQQHALGDVLQILQIIIHLRWSEGYLNAAIIVNLNS 973


>08_01_0298 -
           2406254-2406322,2406444-2406541,2408652-2408769,
           2408890-2408980,2409243-2409406,2410027-2410242,
           2410405-2410475,2410552-2410619,2412027-2412166
          Length = 344

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = -3

Query: 377 LAFQDAGNPPLYVIVEWKYEASLFNPMTWRLIKSPSIFIEYIKLSSIEYNTEITVCPKMK 198
           L   D G PPL   +   Y    F P T +   S    I   + SSI   TE+   PK +
Sbjct: 196 LTDDDEGEPPLLQRMAEDYGDLYFIPSTCQFFNSWHSDIVGWRTSSIRRKTEL---PKWE 252

Query: 197 KPVVNNLPTVMKTKY 153
           + +    P ++  +Y
Sbjct: 253 ESISEKYPHIVHEEY 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,108,262
Number of Sequences: 37544
Number of extensions: 307164
Number of successful extensions: 629
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)