Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16h09
         (649 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127869-1|BAC87169.1| 1533|Homo sapiens protein ( Homo sapiens ...    31   3.5  
AK025740-1|BAB15229.1|  774|Homo sapiens protein ( Homo sapiens ...    30   8.2  

>AK127869-1|BAC87169.1| 1533|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45972 fis, clone PLACE7018304. ).
          Length = 1533

 Score = 31.1 bits (67), Expect = 3.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 446 KTDRRSLNPEQKYYKPGEIETKMLAFQDAGNPPLYVIVEW 327
           +TD   LNP  K++KPG IE   +   D G    Y I  W
Sbjct: 177 RTDEILLNPNNKWFKPGIIEKFRIELPDLGR--FYKIRVW 214


>AK025740-1|BAB15229.1|  774|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22087 fis, clone HEP15918. ).
          Length = 774

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 466 WWTETIIKPIGDPSIRNKNITSPEKLKRKCWLSKMPVT 353
           WW +T   P G PS+   +++SP+     CWL ++ ++
Sbjct: 219 WWKKT---PAG-PSLEETSVSSPKGSSEPCWLIRLCIS 252


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,963,537
Number of Sequences: 237096
Number of extensions: 1811545
Number of successful extensions: 3428
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3424
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)