Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16h09
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83113-8|CAB05549.1|  340|Caenorhabditis elegans Hypothetical pr...    32   0.40 
Z81042-6|CAB02797.1|  340|Caenorhabditis elegans Hypothetical pr...    32   0.40 
Z83219-2|CAB05695.1|  377|Caenorhabditis elegans Hypothetical pr...    31   0.93 
Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81125-5|CAB03381.2|  398|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF408760-1|AAO27839.1|  318|Caenorhabditis elegans unknown prote...    30   1.6  
AF045638-5|AAC02562.3|  544|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z81567-5|CAB04588.2|  154|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81017-3|CAB54257.1|  629|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z81017-2|CAB02672.1|  578|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z81017-1|CAB02669.1|  592|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U80221-1|AAB38367.1|  579|Caenorhabditis elegans F58A3.1b protein.     27   8.7  
U80220-1|AAB38366.1|  592|Caenorhabditis elegans F58A3.1a protein.     27   8.7  

>Z83113-8|CAB05549.1|  340|Caenorhabditis elegans Hypothetical
           protein C27H6.8 protein.
          Length = 340

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 20/73 (27%), Positives = 37/73 (50%)
 Frame = -2

Query: 327 EVRSLIIQPNDVEINKIPKYFHRIYKTFVDRIQY*NNGMPKNEKTCRQQSANGHENEILQ 148
           EV + I+  N V  + I  ++HR+Y+ FV+ I   +NG+ + +   R  S+    +   Q
Sbjct: 99  EVINQILGGN-VSSSMIDLFYHRLYEQFVESIDAIDNGISQYDGVPRYHSSGNLSSRTGQ 157

Query: 147 VLRKLNEPHYNSN 109
                NEP  +++
Sbjct: 158 FNSHWNEPENDAD 170


>Z81042-6|CAB02797.1|  340|Caenorhabditis elegans Hypothetical
           protein C27H6.8 protein.
          Length = 340

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 20/73 (27%), Positives = 37/73 (50%)
 Frame = -2

Query: 327 EVRSLIIQPNDVEINKIPKYFHRIYKTFVDRIQY*NNGMPKNEKTCRQQSANGHENEILQ 148
           EV + I+  N V  + I  ++HR+Y+ FV+ I   +NG+ + +   R  S+    +   Q
Sbjct: 99  EVINQILGGN-VSSSMIDLFYHRLYEQFVESIDAIDNGISQYDGVPRYHSSGNLSSRTGQ 157

Query: 147 VLRKLNEPHYNSN 109
                NEP  +++
Sbjct: 158 FNSHWNEPENDAD 170


>Z83219-2|CAB05695.1|  377|Caenorhabditis elegans Hypothetical
           protein C31C9.3 protein.
          Length = 377

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = -3

Query: 290 RLIKSPSIFIEYIKLSSIEYNTEITVCPKMKKPVV-NNLPTVMKTKY 153
           R++KSP + +E ++L  +E+N E T C +    V+ N+ P V+  ++
Sbjct: 180 RVLKSPKLKLEKLRLDFLEHNKEDTQCMEELLTVLENSEPHVLNIEF 226


>Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical
           protein ZC504.3 protein.
          Length = 668

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -3

Query: 530 KVANSTESKNHGPESGKVTITLVDRNNNKTDRRSLNPEQKYYKPGEI----ETKMLAFQD 363
           K +  +++ NH P+ GK+   ++D N  K ++  +  E     P E+    E     F D
Sbjct: 129 KSSRKSQTPNHLPDDGKLFDRILDPNYKKKEKTVMEVEDVEMSPVEMLDEEEVSTFTFDD 188

Query: 362 AGNP 351
           A  P
Sbjct: 189 ACGP 192


>Z81125-5|CAB03381.2|  398|Caenorhabditis elegans Hypothetical
           protein T22A3.3a protein.
          Length = 398

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/64 (26%), Positives = 34/64 (53%)
 Frame = -3

Query: 536 VLKVANSTESKNHGPESGKVTITLVDRNNNKTDRRSLNPEQKYYKPGEIETKMLAFQDAG 357
           VL   +S+  +  G  S K+ +T +++N      R++ P+Q++Y   +  T   + + +G
Sbjct: 132 VLSSLSSSPQQRSGLRSQKLHLTYIEKNKRV---RAMIPQQQHYHAFDRPTHYNSRKTSG 188

Query: 356 NPPL 345
            PPL
Sbjct: 189 PPPL 192


>AF408760-1|AAO27839.1|  318|Caenorhabditis elegans unknown protein
           protein.
          Length = 318

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/64 (26%), Positives = 34/64 (53%)
 Frame = -3

Query: 536 VLKVANSTESKNHGPESGKVTITLVDRNNNKTDRRSLNPEQKYYKPGEIETKMLAFQDAG 357
           VL   +S+  +  G  S K+ +T +++N      R++ P+Q++Y   +  T   + + +G
Sbjct: 52  VLSSLSSSPQQRSGLRSQKLHLTYIEKNKRV---RAMIPQQQHYHAFDRPTHYNSRKTSG 108

Query: 356 NPPL 345
            PPL
Sbjct: 109 PPPL 112


>AF045638-5|AAC02562.3|  544|Caenorhabditis elegans Hypothetical
           protein C35B1.2a protein.
          Length = 544

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/62 (19%), Positives = 27/62 (43%)
 Frame = -3

Query: 380 MLAFQDAGNPPLYVIVEWKYEASLFNPMTWRLIKSPSIFIEYIKLSSIEYNTEITVCPKM 201
           ++ ++  G P    + E + E   F  MTW+   +P   +  +     +YN+ + +    
Sbjct: 251 VICYEWMGQPHPLTVYEDQTEKQAFEQMTWKKCSNPEDQVPILARHGCDYNSAVAILLSS 310

Query: 200 KK 195
           +K
Sbjct: 311 EK 312


>Z81567-5|CAB04588.2|  154|Caenorhabditis elegans Hypothetical
           protein K08C9.7 protein.
          Length = 154

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 497 GPESGKVTITLVDRNNNKTDRRSLNPEQKYYKPGE 393
           G +  K  + ++ + NN + R+S +P  KY+K  E
Sbjct: 83  GAKKRKKKVYIIPKKNNISQRKSSSPSPKYFKIDE 117


>Z81017-3|CAB54257.1|  629|Caenorhabditis elegans Hypothetical
           protein F58A3.1c protein.
          Length = 629

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 279 IPKYFHRIYKTFVDRIQY*NNGMPKNEKTCRQQSANGHENE-ILQVLR 139
           IPK+F  I+ + +  +QY   G P  E T    S   +ENE +LQ+ R
Sbjct: 165 IPKFFRSIFDSGMRELQYVLRG-PSRECTLANGS-QAYENENVLQITR 210


>Z81017-2|CAB02672.1|  578|Caenorhabditis elegans Hypothetical
           protein F58A3.1b protein.
          Length = 578

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 279 IPKYFHRIYKTFVDRIQY*NNGMPKNEKTCRQQSANGHENE-ILQVLR 139
           IPK+F  I+ + +  +QY   G P  E T    S   +ENE +LQ+ R
Sbjct: 114 IPKFFRSIFDSGMRELQYVLRG-PSRECTLANGS-QAYENENVLQITR 159


>Z81017-1|CAB02669.1|  592|Caenorhabditis elegans Hypothetical
           protein F58A3.1a protein.
          Length = 592

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 279 IPKYFHRIYKTFVDRIQY*NNGMPKNEKTCRQQSANGHENE-ILQVLR 139
           IPK+F  I+ + +  +QY   G P  E T    S   +ENE +LQ+ R
Sbjct: 128 IPKFFRSIFDSGMRELQYVLRG-PSRECTLANGS-QAYENENVLQITR 173


>U80221-1|AAB38367.1|  579|Caenorhabditis elegans F58A3.1b protein.
          Length = 579

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 279 IPKYFHRIYKTFVDRIQY*NNGMPKNEKTCRQQSANGHENE-ILQVLR 139
           IPK+F  I+ + +  +QY   G P  E T    S   +ENE +LQ+ R
Sbjct: 115 IPKFFRSIFDSGMRELQYVLRG-PSRECTLANGS-QAYENENVLQITR 160


>U80220-1|AAB38366.1|  592|Caenorhabditis elegans F58A3.1a protein.
          Length = 592

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 279 IPKYFHRIYKTFVDRIQY*NNGMPKNEKTCRQQSANGHENE-ILQVLR 139
           IPK+F  I+ + +  +QY   G P  E T    S   +ENE +LQ+ R
Sbjct: 128 IPKFFRSIFDSGMRELQYVLRG-PSRECTLANGS-QAYENENVLQITR 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,236,958
Number of Sequences: 27780
Number of extensions: 317012
Number of successful extensions: 945
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)