Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16h08
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   4.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   4.2  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   5.5  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   7.3  

>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -3

Query: 386 KNNNFVFLLMCPPSDGFLLIVLSLFYTKV*VFYLSIEALRCLPGQLVFYTLIFK 225
           ++N ++     PPS  F L V S+F+    V   S+     L G +VF   IFK
Sbjct: 59  QDNQYIISGYRPPSFSFYLCVKSIFH----VHNESVNIWTHLFGAIVFLFFIFK 108


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +2

Query: 101 VFVWYDTTRIYMHLRNTLIAISYSN---VILHNTVLPNEKLFVTV*KLTYKILADPADIV 271
           +FV +  +    HL+N L     SN   V L   V  N  + +    +  K   +  + +
Sbjct: 86  LFVSWTVSERAEHLKNLLFDAGLSNLPLVELGGNVFFNSHVPLPCSLVLTKSTQENLNRI 145

Query: 272 VPQLISKKPILL 307
            P L+ K+PILL
Sbjct: 146 TPYLVQKRPILL 157


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 284 ISKKPIL--LYKINLKQSKGIRPTGDTSKEKQNYCFYLIPS 400
           ISK   L   YK+++  +K I   G   +  + YC+Y I S
Sbjct: 843 ISKNQFLEESYKMDVSANKLIHSFGHFLRRLREYCYYAIAS 883


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 110 WYDTTRIYMHLRNTLIAISYSNV 178
           WY+     MH +NT++  ++S+V
Sbjct: 358 WYERFEKLMHAQNTMLRSAFSHV 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,146
Number of Sequences: 5004
Number of extensions: 40117
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)