Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16h08
         (457 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   2.7  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   2.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   2.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   3.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.4  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 386 YLIPSIFIFIYILNLLWTSTNNSR 457
           Y+IP IFI ++   LL +  N+ +
Sbjct: 229 YVIPLIFIILFYSRLLSSIRNHEK 252


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 302 LLYKINLKQSKGIRPTGDTSKEKQNYCFYLIPS 400
           L  +  LK +K +RP  +       YC+ L P+
Sbjct: 195 LFMEETLKAAKRMRPAANWGYYAYPYCYNLTPN 227


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 386 YLIPSIFIFIYILNLLWTSTNNSR 457
           Y+IP IFI ++   LL +  N+ +
Sbjct: 229 YVIPLIFIILFYSRLLSSIRNHEK 252


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = +2

Query: 386 YLIPSIFIFIYILNLLWTSTNNS 454
           Y+IP++ + +  L +LW  + ++
Sbjct: 259 YVIPAVTMMLLTLTVLWLDSRST 281


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 139 MHVNPCRIVPNKNNSASFITFVIEIE 62
           M  +P RIV   N   +F+T   ++E
Sbjct: 257 MDASPPRIVLGTNTILTFMTLASKVE 282


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 39  VIESNVLVSISITKVINDAELFLFGTIRHGFTC 137
           +IE+  L S+ +TKV  D  L  F    + F C
Sbjct: 652 MIETMELTSLLLTKVAEDRPLPEFYIGGNPFNC 684


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,142
Number of Sequences: 438
Number of extensions: 2801
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)