Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16h06
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    28   1.5  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    27   2.5  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   4.4  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   4.4  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   7.8  

>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +2

Query: 50  MIFLSCFSLRSKFKNCSSMPVFLF 121
           ++F+ CFSL S FK+ S  P+FLF
Sbjct: 6   ILFIVCFSLVSAFKDTS--PIFLF 27


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 628 KMKRSVN-CVPVRTSKSRELRGSILYTDCFCLRRNGLQYDC 509
           K KR++  C   R  K+R L GS+   +  CLR   L  DC
Sbjct: 18  KRKRALEACDSCRKQKTRCLAGSVEDENRACLRCRSLNMDC 58


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = -3

Query: 514 DCRRSGCQGSQLCQTLPRPLCEPAHVAC--TSHFKN 413
           DC  + C   + C+     LC+    AC    HFKN
Sbjct: 334 DCENNPCCDGKTCKLTKGSLCDDQQDACCYQCHFKN 369


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 534  VGTAFNTTAAEVAAKGRNCAKPYQ 463
            +GTAFN    EV   G   A PYQ
Sbjct: 1707 MGTAFNMPTNEVHGVGAEMASPYQ 1730


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 523 GRSDANKSNQYTKYYRVTPGFSRSGLEHSSRFASF*EIFSGIYTRTLKSSSSLEDY 690
           G +  +  NQ ++Y        +  LEH  + A   ++ S +Y   LK+ S L DY
Sbjct: 139 GNTRLDLLNQLSEYISPEILLPKRRLEHLLQQAKDYQVSSQVYHNVLKNFSFLSDY 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,211,821
Number of Sequences: 5004
Number of extensions: 61496
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)