Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16h05
(828 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 131 1e-31
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 29 0.80
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 28 1.9
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 27 2.5
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub... 27 4.3
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 26 7.5
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 9.9
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 9.9
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 131 bits (316), Expect = 1e-31
Identities = 61/143 (42%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Frame = -2
Query: 773 HPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGLRW 594
HP +FF L+FR AI+ YIL +F+ SF+ F+++ LL+ D WTVKN+SGRLLVGLRW
Sbjct: 47 HPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAVDLWTVKNVSGRLLVGLRW 106
Query: 593 WNYVDDNGKSHWVFEARQSRVNRN--ESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWMLL 420
N +G+S W+FE+ RN + + FW L L P +W I + +F W+ L
Sbjct: 107 RNETGVDGESIWIFESADPSRPRNAVDQKTFWYALYLYPFIWIILGIVAIIRFEFLWLAL 166
Query: 419 VLIALTLTGANLYGYIKCKFGAK 351
V +A+ LT N Y +C AK
Sbjct: 167 VAVAIGLTSVNTAAYSRCDKDAK 189
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 29.1 bits (62), Expect = 0.80
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 362 FGAKESLKSATTEFMKQQIFQNAPAFMFSQPTPPNAGNTGV 240
F + +S KSA+ F + I N FMF T ++ NT +
Sbjct: 334 FSSLQSAKSASVSFSRSYIDWNPEGFMFHSKTKKSSFNTSL 374
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.9 bits (59), Expect = 1.9
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = -2
Query: 779 FVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGL 600
FV+P + F L CS ++ ++L G F F+A + I L + N S R
Sbjct: 358 FVYPLVQEFCLFLACSFVVSFLLHGSF---FLAVLSVDIRRLELQDFLDSNSSNR---NS 411
Query: 599 RWW 591
+WW
Sbjct: 412 KWW 414
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 27.5 bits (58), Expect = 2.5
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = -2
Query: 767 YIVFFHLVFRCSAIIVYILCG-----WFSDSFIASFVLVILLLSADFWTVKNIS 621
Y+ F LV +A++V G W S I V +L+L A +W KNI+
Sbjct: 225 YLGSFLLVTGITALVVTFNMGGDAFPWVSPVIITLLVSSVLILFAFYWVEKNIA 278
>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 804
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 309 DIPKRTCLYVLATHAAQRWQHWCRLNKI 226
D+P+ TCL +++H R Q RL +I
Sbjct: 625 DLPEATCLIQISSHYGSRRQEAQRLGRI 652
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -2
Query: 722 VYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWV 555
V+I+ G+ F A L LL +F+ G L W +++ +NGK++W+
Sbjct: 30 VWIIYGYSIGGFFAFLSLFHLL---EFYITARFQGSQL---SWDSFILNNGKAYWL 79
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 779 FVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVI 663
F+HP+ +FRC + + L + S SF SF+ +
Sbjct: 101 FLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFL 139
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 406 KAINTRSIHLNLSPKRQNIKKVDQTKGHSVRPIQN 510
K N S+ LN +PK I +D +P+ N
Sbjct: 264 KEFNNDSVVLNTTPKEMQISSLDAVDKLEDKPVSN 298
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 648 CRQQ*ND*YEACNE*VGEPPTQDVHNYRRASEHQVEEHYV 767
CR++ Y C++ G P Q NY H ++HY+
Sbjct: 264 CREKHERCY-ICDQVAGRPTHQYFKNYDSLERHFEKDHYI 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,268,690
Number of Sequences: 5004
Number of extensions: 68380
Number of successful extensions: 231
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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