Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16h05
(828 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC008430-1|AAH08430.1| 205|Homo sapiens family with sequence si... 200 7e-51
AF223467-1|AAF64142.1| 205|Homo sapiens NPD008 protein protein. 196 6e-50
AF151906-1|AAD34143.1| 181|Homo sapiens CGI-148 protein protein. 187 4e-47
BC011952-1|AAH11952.1| 276|Homo sapiens family with sequence si... 150 5e-36
AB074181-1|BAE45741.1| 164|Homo sapiens putative protein produc... 149 2e-35
BC067364-1|AAH67364.1| 871|Homo sapiens PRP40 pre-mRNA processi... 31 3.9
BC050398-1|AAH50398.1| 788|Homo sapiens PRPF40B protein protein. 31 3.9
>BC008430-1|AAH08430.1| 205|Homo sapiens family with sequence
similarity 18, member B protein.
Length = 205
Score = 200 bits (487), Expect = 7e-51
Identities = 93/180 (51%), Positives = 123/180 (68%), Gaps = 11/180 (6%)
Frame = -2
Query: 803 EEDNANK----QFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWT 636
EE+ N+ + HP FFHL FR SAIIVY+LCG S SFI V +ILLLS DFW
Sbjct: 19 EEETTNRPRKAKIRHPVASFFHLFFRVSAIIVYLLCGLLSSSFITCMVTIILLLSCDFWA 78
Query: 635 VKNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRLFWMGLTLCPLVW 474
VKN++GRL+VGLRWWN++D++GKSHWVFE+R+ N ESR+FW+GL CP++W
Sbjct: 79 VKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLW 138
Query: 473 STFFIFCLFGLKFKWMLLVLIALTLTGANLYGYIKCKFGAKESLKS-ATTEFMKQQIFQN 297
F LF + KW+ +V++ + L GANLYGYI+CK +++ L S AT+ F KQ + QN
Sbjct: 139 VIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVRSRKHLTSMATSYFGKQFLRQN 198
>AF223467-1|AAF64142.1| 205|Homo sapiens NPD008 protein protein.
Length = 205
Score = 196 bits (479), Expect = 6e-50
Identities = 92/180 (51%), Positives = 122/180 (67%), Gaps = 11/180 (6%)
Frame = -2
Query: 803 EEDNANK----QFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWT 636
EE+ N+ + HP FFHL FR SAIIVY+LC S SFI V +ILLLS DFW
Sbjct: 19 EEETTNRPRKAKIRHPVASFFHLFFRVSAIIVYLLCELLSSSFITCMVTIILLLSCDFWA 78
Query: 635 VKNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRLFWMGLTLCPLVW 474
VKN++GRL+VGLRWWN++D++GKSHWVFE+R+ N ESR+FW+GL CP++W
Sbjct: 79 VKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLW 138
Query: 473 STFFIFCLFGLKFKWMLLVLIALTLTGANLYGYIKCKFGAKESLKS-ATTEFMKQQIFQN 297
F LF + KW+ +V++ + L GANLYGYI+CK +++ L S AT+ F KQ + QN
Sbjct: 139 VIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVRSRKHLTSMATSYFGKQFLRQN 198
>AF151906-1|AAD34143.1| 181|Homo sapiens CGI-148 protein protein.
Length = 181
Score = 187 bits (456), Expect = 4e-47
Identities = 84/161 (52%), Positives = 109/161 (67%), Gaps = 10/161 (6%)
Frame = -2
Query: 803 EEDNANK----QFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWT 636
EE+ N+ + HP FFHL FR SAIIVY+LC S SFI V +ILLLS DFW
Sbjct: 19 EEETTNRPRKAKIRHPVASFFHLFFRVSAIIVYLLCELLSSSFITCMVTIILLLSCDFWA 78
Query: 635 VKNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRLFWMGLTLCPLVW 474
VKN++GRL+VGLRWWN++D++GKSHWVFE+R+ N ESR+FW+GL CP++W
Sbjct: 79 VKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLW 138
Query: 473 STFFIFCLFGLKFKWMLLVLIALTLTGANLYGYIKCKFGAK 351
F LF + KW+ +V++ + L GANLYGYI+CK K
Sbjct: 139 VIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVRKK 179
>BC011952-1|AAH11952.1| 276|Homo sapiens family with sequence
similarity 18, member B2 protein.
Length = 276
Score = 150 bits (364), Expect = 5e-36
Identities = 69/136 (50%), Positives = 88/136 (64%), Gaps = 10/136 (7%)
Frame = -2
Query: 803 EEDNANK----QFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWT 636
EE+ N+ + HP FFHL FR SAIIV +LC S SFI V +ILLLS DFW
Sbjct: 19 EEETTNRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSSFITCMVTIILLLSCDFWA 78
Query: 635 VKNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRLFWMGLTLCPLVW 474
VKN++GRL+VGLRWWN++D++GKSHWVFE+R+ N ESR+FW+GL C ++W
Sbjct: 79 VKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACSVLW 138
Query: 473 STFFIFCLFGLKFKWM 426
F LF KW+
Sbjct: 139 VIFAFSALFSFTVKWL 154
>AB074181-1|BAE45741.1| 164|Homo sapiens putative protein product
of Nbla10383 protein.
Length = 164
Score = 149 bits (360), Expect = 2e-35
Identities = 68/136 (50%), Positives = 87/136 (63%), Gaps = 10/136 (7%)
Frame = -2
Query: 803 EEDNANK----QFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWT 636
EE+ N+ + HP FFHL FR SAIIV +LC S SFI V +ILLLS DFW
Sbjct: 19 EEETTNRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSSFITCMVTIILLLSCDFWA 78
Query: 635 VKNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRLFWMGLTLCPLVW 474
VKN++GRL+VGLRWWN++D++GK HWVFE+R+ N ESR+FW+GL C ++W
Sbjct: 79 VKNVTGRLMVGLRWWNHIDEDGKGHWVFESRKESSQENKTVSEAESRIFWLGLIACSVLW 138
Query: 473 STFFIFCLFGLKFKWM 426
F LF KW+
Sbjct: 139 VIFAFSALFSFTVKWL 154
>BC067364-1|AAH67364.1| 871|Homo sapiens PRP40 pre-mRNA processing
factor 40 homolog B (S. cerevisiae) protein.
Length = 871
Score = 31.5 bits (68), Expect = 3.9
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 591 ELCGRQRQVALGVRGPSEPGQQEREPPVLDGPDAVPLGLV 472
E G+Q+Q P P Q PPV GP VP GL+
Sbjct: 177 EAAGKQQQQLPQTLQPQPPQPQPDPPPVPPGPTPVPTGLL 216
>BC050398-1|AAH50398.1| 788|Homo sapiens PRPF40B protein protein.
Length = 788
Score = 31.5 bits (68), Expect = 3.9
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 591 ELCGRQRQVALGVRGPSEPGQQEREPPVLDGPDAVPLGLV 472
E G+Q+Q P P Q PPV GP VP GL+
Sbjct: 177 EAAGKQQQQLPQTLQPQPPQPQPDPPPVPPGPTPVPTGLL 216
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,753,357
Number of Sequences: 237096
Number of extensions: 2570844
Number of successful extensions: 7170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7165
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10370898348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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