Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16h04
(872 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 33 0.040
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 33 0.040
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 32 0.12
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 31 0.16
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.49
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.86
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 29 1.1
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 29 1.1
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 28 2.0
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy... 27 2.6
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 27 2.6
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ... 27 3.5
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 3.5
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 27 3.5
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 27 3.5
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|... 27 3.5
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 27 3.5
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo... 27 3.5
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 4.6
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 27 4.6
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 26 6.1
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 6.1
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 26 6.1
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 26 6.1
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma... 26 8.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 8.1
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 26 8.1
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 33.5 bits (73), Expect = 0.040
Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 2/159 (1%)
Frame = -2
Query: 820 SATTDKDVILTNSELDKIEKRVYETVSQELQTDESSSISLDSNIKFFKTTVEKLFENFYT 641
S D ++SE + + + S ESSS DS+ + E E+ +
Sbjct: 177 SEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDS 236
Query: 640 SMRDFDLYKQRFNEILAKNKEESLVDMEDFI--NDMFQNMMSSVDIKVTGSTTTAKRSGN 467
S D + +E + S + E +D N S D + S+ + S +
Sbjct: 237 SSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSS 296
Query: 466 CDASTPTNSQGSEGYVTFYNGNLNTDSSFNEQSSATRSS 350
D+ + ++S S+ + +GN NTD++ + + SA S+
Sbjct: 297 EDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSST 335
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 33.5 bits (73), Expect = 0.040
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -2
Query: 757 VYETVSQELQTDESSSI-SLDSNIKFFKTTVEKLFENFYTSMRDFDLYKQRFNEILAKNK 581
V +T SQ+L +E + ++ N + V L E FY + Y+ +++ + K
Sbjct: 643 VPKTESQKLLLNEMGKLFQVELNFSYDSPDVNLLIEQFY----EITSYESNYDDAFVEYK 698
Query: 580 EESLVDMEDFINDMFQNMMSS 518
+ ++ + +DFI +F N+ S
Sbjct: 699 DATVANRKDFIEFLFHNITVS 719
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 31.9 bits (69), Expect = 0.12
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Frame = -2
Query: 547 NDMFQNMMSSVDIKVTGSTTTAKRSGNCDASTPTNSQGSEGYVTFYNG------NLNTDS 386
+D F++ S+VD + S ++ + + S+G++ YV + + N+DS
Sbjct: 30 SDHFEDSSSNVDESLDSSNPSSNEKAS-HTNEEYRSKGNQSYVPSSSNEPSPESSSNSDS 88
Query: 385 SFNEQSSATRSSGDG---GETFNL 323
S ++ SS R +GD GE FNL
Sbjct: 89 SSSDDSSVDRLAGDPFELGENFNL 112
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 31.5 bits (68), Expect = 0.16
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = -2
Query: 856 EHDEVPVRESDLSATTDKDVILTNSELDKIEKRVYETVSQELQTDESSSISLDSNIKFFK 677
+ D V+ +LS T + T L E+ + + V++ L+ DE ISL N+KF +
Sbjct: 330 DFDGNEVKSEELSQTVKVESQETPVHLKADEREIRKEVTETLKGDELRKISLQVNVKFSE 389
Query: 676 TTV 668
V
Sbjct: 390 EEV 392
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 29.9 bits (64), Expect = 0.49
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Frame = -2
Query: 850 DEVPVRESDLSATTDKDVILTNSELDKIEKRVYETVSQELQTDESSSIS------LDSNI 689
DE+ + E LS TD V LT SEL I R V ++L+ + I+ LD +
Sbjct: 291 DELHLTEEVLSFLTDDPVTLTASELTDINFRQELDVIRQLEQQKFVEIASQRAKELDVYM 350
Query: 688 KFFK--TTVEKLFENFYTSMRDFDLYKQRFNEILAKNKEESLVDMEDFINDMFQNMMSSV 515
+ FK T F +T +++ + + + L K E + V++ I D F S+
Sbjct: 351 EEFKRSLTENNGFTTLFTELKEKNSISE-LSPSLQKTIEWARVNLASTIYDTFIGKEKSL 409
Query: 514 D 512
+
Sbjct: 410 E 410
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.1 bits (62), Expect = 0.86
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = -2
Query: 784 SELDKIEKRVYETVSQELQTDESSSISLDSNIKFFKTTVEKLFENFYTSMRDFDLYKQRF 605
S ++ I+ ++ E +++Q DES+ LD I K E + + +RD ++
Sbjct: 1495 SLMENIKSQLQEA-KEKIQVDESTIQELDHEITASKNNYEGKLNDKDSIIRDLSENIEQL 1553
Query: 604 NEILAKNK 581
N +LA+ K
Sbjct: 1554 NNLLAEEK 1561
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 871 YYERYEHD-EVPVRESDLSATTDKDVILTNSELDKIEKRVYE-TVSQELQ 728
+YE++ HD +P+ L+ TDK+ + + + K++Y T + LQ
Sbjct: 568 WYEKWFHDLNIPLLRKCLTLRTDKNPFIEQPDEPNVTKKIYRVTYTDALQ 617
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -3
Query: 501 PAQRPQLNVPEIVTHPHPPTRKGRKDTLR-FTMETSIRT 388
P +PQ + +IV+ P+PP+ K K R +M +SI T
Sbjct: 264 PVSQPQPSPDKIVSSPNPPSAKREKKKRRKSSMSSSITT 302
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3
Query: 156 PSAETASPATWTSASRSARPRKTFTPTKTSRSTRAVT 46
P S A+ S S+RP T TP+ TSRS +VT
Sbjct: 202 PLQRKNSNASIHSLGSSSRPTLTRTPSITSRSVNSVT 238
>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 357
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -2
Query: 793 LTNSELDKIEKRVYETVSQELQTDESSSISLDSN 692
LTN +LD EK + +S T++SSS+ LDS+
Sbjct: 129 LTNEQLDTNEKYLQSALSYTQPTEDSSSL-LDSD 161
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.5 bits (58), Expect = 2.6
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Frame = -2
Query: 496 STTTAKRSGNCDASTPTNSQGSEGYVTFYNGNLNTDSSFNEQSSATRSSGDGGETFNLYL 317
S T G CD+ T + + + + YN N + + QS S G ++ L
Sbjct: 121 SADTIYLFGGCDSETDSTFEVGDNSLYAYNFKSNQWNLVSTQSPLP-SPRTG---HSMLL 176
Query: 316 VEGTSCVQINVVERSRLSEINI---RNLDY--ESVRNKFASAENLKKLGDEFDEDSWAAE 152
V+ + + L++I++ + +D +S + A+A N++K EFDE W+ E
Sbjct: 177 VDSKLWIFGGECQGKYLNDIHLFDTKGVDRRTQSELKQKANANNVEKANMEFDETDWSWE 236
>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 238
Score = 27.1 bits (57), Expect = 3.5
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 435 PCELVGVDASQFPERLAVVVEPVTLMSTEDIIFWNMSLIK-SSMSTKDSSLFLAK 596
PC+LVGVD S+ LA + S + + F + +IK S +KD L L K
Sbjct: 93 PCQLVGVDYSEAAIVLAKNIARHRQFS-DKVKFQQLDIIKDSKFCSKDWDLILDK 146
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = -2
Query: 793 LTNSELDKIEKRVYETVSQELQTDESSSISLDSNIKFFKTTVEKLFENFY 644
+T + DKI ++ E Q + ++ ++ + F K T E F N Y
Sbjct: 1019 MTLEKFDKISDQILEIAMQSRKENDGRTLKQVIQLTFEKATDEPNFSNMY 1068
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 27.1 bits (57), Expect = 3.5
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Frame = -2
Query: 703 LDSNIKFFKTTVEK-LFENFYTSMRDFDLYKQRFNE------ILAKNKEESLVDMEDFIN 545
L S I F+ +K +F+NFYT + L N +L+K KE + +
Sbjct: 441 LSSIIIIFRYVEDKDVFQNFYTKLLAKRLVNGTSNSQDAESSMLSKLKEVCGFEYTSKLQ 500
Query: 544 DMFQNMMSSVDIKVTGSTTTAKRSGNCDAS 455
MFQ++ S +I R+GN D S
Sbjct: 501 RMFQDISLSQEITEAFWQLPQSRAGNIDFS 530
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 691 IKFFKTTVEKLFENFYTSMRDFDLYKQRFNEILAKNKEESLVDME 557
I F + L E MRD ++ QRF EIL E+ L D +
Sbjct: 593 ISGFTDKLHVLLEKVVAMMRDLKVHPQRF-EILKNRLEQELKDYD 636
>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 27.1 bits (57), Expect = 3.5
Identities = 19/71 (26%), Positives = 37/71 (52%)
Frame = -2
Query: 871 YYERYEHDEVPVRESDLSATTDKDVILTNSELDKIEKRVYETVSQELQTDESSSISLDSN 692
Y+E H V SD+S +++ +L K+EK++ ++VS+ QTD+ + N
Sbjct: 233 YFENQLH-LVKASSSDVSNSSNSFPENRYPKLTKVEKQMTKSVSKTSQTDKD-----EDN 286
Query: 691 IKFFKTTVEKL 659
+ F K + ++
Sbjct: 287 LDFTKNLLTRI 297
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -2
Query: 730 QTDESSSISLDSNIKFFKTTVEKLFENFYTSMRDFDLYKQRFNE--ILAKNKEES 572
+ DESS +SNI+ + ++ +ENF RD + K R + +L +N+ +S
Sbjct: 122 ERDESSKKLRESNIEKARKAIDDFYENF-NDKRDKVIAKSRKEQEKLLEENESKS 175
>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 27.1 bits (57), Expect = 3.5
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = -2
Query: 274 SRLSEINIRN-LDYESVRNKFASAENLKKLGDEFDEDSWAAERRDRVPSDLDIRVKKCSA 98
+R ++ +N L ++VRN FA +L+ L ++ + RVPSDL ++ A
Sbjct: 8 ARALDVGYKNFLSKDAVRNIFAYDNHLRGL---VQKECKIHQTPYRVPSDLMVQSASDPA 64
Query: 97 KKNIYSNEDFTVN 59
+ N+++ VN
Sbjct: 65 RANLFNYSSQLVN 77
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -2
Query: 373 QSSATRSSGDGGETFNLYLVEGTSCVQINVVERSRLSEINIRNLDYESVRNKFASAENLK 194
Q S TR GG + YL+ G +Q NV + ++NI N ++ ++ + N+K
Sbjct: 100 QVSVTRQIIMGGTS--KYLINGHRALQQNVQNLFQSVQLNINNPNFLIMQGRITKVLNMK 157
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 492 RPQLNVPEIVTHPHPPTRKGRKDTLRFTMETSIRT 388
+P+ VP V+HP PPT R++ + E+S+ T
Sbjct: 164 KPRKKVP--VSHPLPPTPPSREEHVSVPRESSLFT 196
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 276 LSTTLICTQDVPSTKYRLKVSPPSPELLVAE 368
+ + ++ DV +KY LKV PP+ L++ E
Sbjct: 248 IQSAVLTLVDVLVSKYELKVPPPNEPLILFE 278
>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 186 ETSSMRTAGRPSAETASPATWTSASRSARPRKTFTPTKTSRS 61
ET+ + PS E T S A+P+ FTPTK+S S
Sbjct: 31 ETNESPKSQNPSEEAT---TVNELSCEAKPKLLFTPTKSSLS 69
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 26.2 bits (55), Expect = 6.1
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = -2
Query: 367 SATRSSGDGGETFNLYLVEGTSCVQINVVERSRLSEINIRNLDYESVRNKFA----SAEN 200
+AT DG T ++ + +ER++ S N R + YE + N F+ + N
Sbjct: 303 TATNKMNDGPITKCARETINIKNLKTSNLERNQNSPKNKRTVSYERLANSFSFNALNDYN 362
Query: 199 LKKLGDEFDEDSWAAERRDRVPSD 128
LKK G++ + + +DR D
Sbjct: 363 LKKGGEKLRKKAIKRALKDRGSQD 386
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 480 NVPEIVTHPHPPTRKGRKDTLRF--TMETSIRTLRLT 376
++ I++H PTR G + T+ F T S+R L T
Sbjct: 329 DIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAAT 365
>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 402 TSIRTLRLTNSPQLRGVQE-TEGRPLT 325
TSIR LR +SP GVQE T+ LT
Sbjct: 257 TSIRLLRYPSSPNRLGVQEHTDADALT 283
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 8.1
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = -3
Query: 183 TSSMRTAGRPSAETASPATWTSASRSARPRKTFT----PTKTSRSTRAVTLNRY*PKSAV 16
TSS T + T++P T T+ + S T T P TS S+ V+ N P +
Sbjct: 569 TSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSSSSTQVSWNSTTPITGT 628
Query: 15 TLQKV 1
+ KV
Sbjct: 629 STSKV 633
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 859 YEHDEVPVRESDLSATTD--KDVILTNSELDKIEKRVYETV 743
YE D+ V ++ T D +D+ E +K+E RVY+ V
Sbjct: 643 YEEDDEDVEAAEKFYTNDIQRDLAKKALECNKLENRVYDLV 683
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,397,621
Number of Sequences: 5004
Number of extensions: 70235
Number of successful extensions: 323
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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