Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16g24
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 293 2e-80
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 291 6e-80
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 30 0.32
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.56
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 27 4.0
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 27 4.0
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 9.2
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 293 bits (718), Expect = 2e-80
Identities = 146/242 (60%), Positives = 181/242 (74%), Gaps = 1/242 (0%)
Frame = -1
Query: 736 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 557
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 556 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 377
FPM QGVL RVRLL+ GH CYRPRRDGERKRKSVRGCIV +L+VLAL IV++G Q+
Sbjct: 61 FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120
Query: 376 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPK 200
IPGLTD VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK KP KAPK
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPK 177
Query: 199 IQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEIKRRRSAS 20
IQRLVTP LQ + AE+A+L+A+R E+K +++E +K RR++S
Sbjct: 178 IQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAK-QKKEVVKARRASS 236
Query: 19 MR 14
M+
Sbjct: 237 MK 238
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 291 bits (715), Expect = 6e-80
Identities = 145/242 (59%), Positives = 180/242 (74%), Gaps = 1/242 (0%)
Frame = -1
Query: 736 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 557
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 556 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 377
FPM QGVL RVRLL+ GH CYRPRRDGERKRKSVRGCIV +L+VLAL I+++G Q+
Sbjct: 61 FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120
Query: 376 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPK 200
IPGLTD VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK KP KAPK
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPK 177
Query: 199 IQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEIKRRRSAS 20
IQRLVTP LQ + AE+A+L+A+R E+K +R E +K RR++S
Sbjct: 178 IQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKR-EVVKARRASS 236
Query: 19 MR 14
++
Sbjct: 237 LK 238
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 30.3 bits (65), Expect = 0.32
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Frame = -1
Query: 298 LSKEDDVRRYVVKRVLPAKEGKEN-AKPRHKAPKIQRLVT-PVVLQXXXXXXXXXXXXXX 125
L+KE ++R+ + ++ ++ K K R + PK +R +T VV
Sbjct: 512 LAKEIEMRKSLELKLKLSQSNKAGPVKHRKRRPKSKRRITGKVVFDSPNVASGVESDEGS 571
Query: 124 XXKSSEAEYAKLLAQRKKESKVRRQEEIKRRRSASMRDSK 5
S ++EY+ +L+ K ++ +RR S+SM+ +K
Sbjct: 572 EEISLDSEYSDILSDDGDFEKEKQATLPRRRSSSSMKGNK 611
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.5 bits (63), Expect = 0.56
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -1
Query: 109 EAEYAKLLAQRKKESKVRRQEEIKRRRSASMRDSK 5
E E ++L +RK+ K+ ++EE +RRR ++S+
Sbjct: 695 EEEEKRILEERKRREKLDKEEEERRRRELLEKESE 729
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -1
Query: 112 SEAEYAKLLAQRKKESKVRRQEEIKR-RRSASMRDSK 5
++ AKLL + ++E+K +++ E+K+ R RD K
Sbjct: 565 AQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKK 601
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 26.6 bits (56), Expect = 4.0
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Frame = +2
Query: 170 QNYRGD*PLDLRCLMSGF----SIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT 337
+N D P L C+ + S+ FS G A +I + K E + GSTFG
Sbjct: 57 ENENEDLPKQLCCMSTHTGTVTSVRFSPNGQYLASGSDDRVVIIWHKEEAIPGLGSTFG- 115
Query: 338 *TAGYISISQSRNFLGTLAHNNKSQD 415
+G R++ L H+N QD
Sbjct: 116 --SGEKHTENWRSYRRLLGHDNDIQD 139
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 778 AFFMADVRRGLTAVMKLNVSYPATGCQKLFE 686
A F+ +RRG+ A+ K V + T K+FE
Sbjct: 133 AEFIYCIRRGIKAIFKTTVQFLPTRLAKIFE 163
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.4 bits (53), Expect = 9.2
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Frame = +1
Query: 541 PVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTS------G 702
P+SS I H H+P + D+ R C F++ +E + P + S G
Sbjct: 970 PISSNIPILSVAPFHAHHAPQGYIYVDENSFIRICKFQEDFEYDNKWPYKKVSLGKQING 1029
Query: 703 IPLPGTKRLTS*LRSIPVE 759
I TK + + ++P+E
Sbjct: 1030 IAYHPTKMVYAVGSAVPIE 1048
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,736
Number of Sequences: 5004
Number of extensions: 63005
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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