Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16g22
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 323 1e-89
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 169 4e-43
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 162 4e-41
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 116 3e-27
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 28 1.5
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 26 4.7
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 26 6.1
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 25 8.1
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 8.1
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 25 8.1
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 25 8.1
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 323 bits (794), Expect = 1e-89
Identities = 145/211 (68%), Positives = 179/211 (84%)
Frame = -3
Query: 680 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMIPFPRLHFFMPGFAPLTSRNSQQYRALTVP 501
LVS M+GVTT RFPG+LN+DLRKLAVNM+PFPRLHFFM GFAPL + S ++A++VP
Sbjct: 228 LVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVP 287
Query: 500 ELTQQMFDAKNMMAACDPHRGRYLTVATVFRGRMSMKEIDEQILNVQKKNKDFFVEWIPN 321
ELTQQMFDA NMM A DP GRYLTVA +FRG++SMKE+DEQI +VQ KN +FVEWIP+
Sbjct: 288 ELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPD 347
Query: 320 NVQTAVCDIPPRGMKMSATFIGNTTAIQEIFKRISEQFAAMFSRKAFLHWYTGEGMEEGD 141
NV AVC +PP+ +KMSATFIGN+T+IQEIF+R+ +QF+AMF RKAFLHWYTGEGM+E +
Sbjct: 348 NVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEME 407
Query: 140 FAEADNNVSDLLSEYQQYQDATIDQEFEDEE 48
F EA++N++DL+SEYQQYQ+A ID+ ED E
Sbjct: 408 FTEAESNMNDLVSEYQQYQEAGIDEGDEDYE 438
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 169 bits (410), Expect = 4e-43
Identities = 73/219 (33%), Positives = 129/219 (58%), Gaps = 8/219 (3%)
Frame = -3
Query: 680 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMIPFPRLHFFMPGFAPLTSRNSQQYRALTVP 501
L++ +S +T LRF G LN DL + N++P+PR+HF + +AP+ S + + +V
Sbjct: 230 LIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQ 289
Query: 500 ELTQQMFDAKNMMAACDPHRGRYLTVATVFRGRMSMKEIDEQILNVQKKNKDFFVEWIPN 321
E+T Q F+ N M CDP GRY+ ++RG + +++ + ++ K FV+W P
Sbjct: 290 EITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPT 349
Query: 320 NVQTAVCDIPPRGMKMS--------ATFIGNTTAIQEIFKRISEQFAAMFSRKAFLHWYT 165
+ +CD PP+ ++ S + NTT+I E + R+ +F M+S++AF+HWY
Sbjct: 350 GFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYV 409
Query: 164 GEGMEEGDFAEADNNVSDLLSEYQQYQDATIDQEFEDEE 48
GEGMEEG+F+EA +++ L +Y++ +++ ++ +EE
Sbjct: 410 GEGMEEGEFSEAREDLAALERDYEEVGQDSMEVDYMEEE 448
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 162 bits (394), Expect = 4e-41
Identities = 71/220 (32%), Positives = 129/220 (58%), Gaps = 9/220 (4%)
Frame = -3
Query: 680 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMIPFPRLHFFMPGFAPLTSRNSQQYRALTVP 501
L++ +S +T LRF G LN DL + N++P+PR+HF + ++P+ S + + +V
Sbjct: 234 LIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQ 293
Query: 500 ELTQQMFDAKNMMAACDPHRGRYLTVATVFRGRMSMKEIDEQILNVQKKNKDFFVEWIPN 321
E+T Q F+ N M CDP GRY+ ++RG + +++ + +++ + FV+W P
Sbjct: 294 EITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPT 353
Query: 320 NVQTAVCDIPPR--------GMKMSATFIGNTTAIQEIFKRISEQFAAMFSRKAFLHWYT 165
+ +C PP+ + + + NTT+I E + R+ +F M+S++AF+HWY
Sbjct: 354 GFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYV 413
Query: 164 GEGMEEGDFAEADNNVSDLLSEYQQY-QDATIDQEFEDEE 48
GEGMEEG+F+EA +++ L +Y++ QD+ ++ +E +E
Sbjct: 414 GEGMEEGEFSEAREDLAALERDYEEVGQDSMDNEMYEADE 453
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 116 bits (280), Expect = 3e-27
Identities = 61/210 (29%), Positives = 116/210 (55%), Gaps = 10/210 (4%)
Frame = -3
Query: 680 LVSLTMSGVTTCLRFPGQLNADLRKLAVNMIPFPRLHFFMPGFAPLTSRNSQQYRAL--- 510
LVS MS TT LR+PG +N DL + ++IP PR HF + + P T++ ++ +A+
Sbjct: 231 LVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKT 290
Query: 509 TVPELTQQMFDAKNMMAACDP-HRGRYLTVATVFRGRMSMKEIDEQILNVQKKNKDFFVE 333
TV ++ +++ KN M + +P + ++++ + +G ++ + +L ++++ F+
Sbjct: 291 TVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIP 350
Query: 332 WIPNNVQTAVCDIPP---RGMKMSATFIGNTTAIQEIFKRISEQFAAMFSRKAFLHWYTG 162
W P ++Q A+ P ++S + N T+I +FKR +Q+ + R AFL Y
Sbjct: 351 WGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKK 410
Query: 161 EGMEEGDFAEADNN---VSDLLSEYQQYQD 81
E + E D E D++ V+DL++EY+ +D
Sbjct: 411 EAIFEDDLNEFDSSRDVVADLINEYEACED 440
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -2
Query: 621 RGSTKVSGQYDTLSEAALLYARLCTADVKK*SAVPRSHGTRINTTNVRRKEYDGGL*SSP 442
+GST V DTLS +A L+ + V + S R HGT N+ N + +D +
Sbjct: 9 KGSTNVGSSTDTLSTSASLHPSMNAGSVNEYSEQQR-HGT--NSFNGKPSVHDSVGSDAS 65
Query: 441 RSLSHCSH 418
S H +H
Sbjct: 66 VSNGHNNH 73
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -3
Query: 98 YQQYQDATIDQEFEDEEXSRRAKRR 24
+Q +Q+ D+++E+EE +AKRR
Sbjct: 48 HQAFQEDEGDEDWEEEEHKPKAKRR 72
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 387 FLH*HSSPEDGGYSEIATAVRI 452
F + H S EDG YSE A+ +
Sbjct: 3 FFNAHKSAEDGNYSETTNAISL 24
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 161 EGMEEGDFAEADNNVSDLLSEYQQYQDATIDQEFEDE 51
E + + +A + + D+L +Y + T Q+FEDE
Sbjct: 121 ESLSSTTYEDAPSQL-DILDNVVEYMNKTASQDFEDE 156
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 529 LFLDVSGAKPGIKKCSLGKGIILTANFRRSALSC 630
L+ D + K G+K +L KG + RSA +C
Sbjct: 178 LYYDSATVKKGLKSGTLFKGTLRILENHRSAFAC 211
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -3
Query: 554 FAPLTSRNSQQYRALTVPE--LTQQMFDAKNMM 462
FAP TSR S Y +T+ + LT + D N++
Sbjct: 276 FAPSTSRTSCYYTLITLNQTVLTHKQVDVANLL 308
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 8.1
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -3
Query: 401 MSMKEIDEQILNVQKKNKDFFVEWIPNNVQTAVCDIPPRGMKMSATFIGNTTAIQEIFKR 222
M++ ++D +Q N+D E PNN TA+ P+ + +GN + I R
Sbjct: 55 MNVHQLDTAGEPLQSMNED---EVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASR 111
Query: 221 ISE-QFAAMFSR 189
+ E + +FS+
Sbjct: 112 MQEDELQQIFSK 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,518
Number of Sequences: 5004
Number of extensions: 59600
Number of successful extensions: 201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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