Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16g21
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.3  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      23   2.3  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   7.1  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   7.1  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   7.1  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   7.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   7.1  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 28  NNRINYENSNVNFIQYFQS 84
           NN+ NY N+N N   Y+++
Sbjct: 101 NNKYNYNNNNYNKKLYYKN 119


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 341 DCQH*FIRWYSLQKSFSMGYEIILQD 264
           D QH  +RW + Q S +  +E +  D
Sbjct: 3   DTQHFCLRWNNYQSSITSAFENLRDD 28


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 341 DCQH*FIRWYSLQKSFSMGYEIILQD 264
           D QH  +RW + Q S +  +E +  D
Sbjct: 3   DTQHFCLRWNNYQSSITSAFENLRDD 28


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 22  KLNNRINYENSNVNFIQYFQSSRHQFQLIDRI 117
           K +N  NY N+N N   Y +   +    I++I
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 22  KLNNRINYENSNVNFIQYFQSSRHQFQLIDRI 117
           K +N  NY N+N N   Y +   +    I++I
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 22  KLNNRINYENSNVNFIQYFQSSRHQFQLIDRI 117
           K +N  NY N+N N   Y +   +    I++I
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 22  KLNNRINYENSNVNFIQYFQSSRHQFQLIDRI 117
           K +N  NY N+N N   Y +   +    I++I
Sbjct: 90  KYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 421 ELIWIVHKLQFHHNALSC*YHQNIFVPDSG 510
           +LI  + K +F H       HQN+FV +SG
Sbjct: 268 DLILTLGKKEFSHYE-----HQNVFVKNSG 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,489
Number of Sequences: 438
Number of extensions: 4631
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)