Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16g17
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              25   0.55 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.9  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -1

Query: 403 MKTCGIWLLNLI*HTVLQNVHLN*AISDVQ*YR---S*YSVKC 284
           MK   IWL++L  + +LQ   +   ISD+  +R   S Y  KC
Sbjct: 1   MKAAEIWLVSLYWYLILQIALVYGEISDIDEFREMTSKYRKKC 43


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 20  QTLQ*HYLNKNYVNNLTKYSHTYEFLSLTKYEITQKSTICLS 145
           QTL     N NYVN    Y HT   + +    I    ++C S
Sbjct: 51  QTLNELNFNLNYVNKGVTYKHT--IIEMDSNPIKTALSVCKS 90


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 629 ILHFYTICLKLLMKKCSYRFTEVLNAILKTFVL 531
           IL+F   CL+  +   S    EV  A L+ F+L
Sbjct: 282 ILYFIRGCLQTYLINASTYLNEVHTASLRKFIL 314


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 629 ILHFYTICLKLLMKKCSYRFTEVLNAILKTFVL 531
           IL+F   CL+  +   S    EV  A L+ F+L
Sbjct: 320 ILYFIRGCLQTYLINASTYLNEVHTASLRKFIL 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,994
Number of Sequences: 438
Number of extensions: 4495
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)