Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16g10
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.94 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   6.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 268  PLPAPRGAGTQFNSSNKREANRTGLILVVRCLQ 170
            P PA  G GT+      R  +R  L+  VR +Q
Sbjct: 1024 PKPATGGKGTRPKRGKYRNYDRDSLVEAVRAVQ 1056


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 294 EMLSAVRCALSQLQGEPEPNLIVPTNEKPIE 202
           ++L  V+C   ++   P+  + VP+NE+ I+
Sbjct: 349 DILDDVKCEDERVISIPDKEITVPSNEETID 379


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 28  LFLNIVFNIAVSMTNIDYCLFREINSSRVFNDETRSLV 141
           LFL +V N  ++  N    L RE       N+ET  ++
Sbjct: 320 LFLGLVGNSGIACVNEHQVLQRESFDVVAQNEETLQMI 357


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 192 ISPVLLASRLLELLNWVPAPLGA 260
           +S VLL +   E L W   P GA
Sbjct: 13  VSVVLLDTTQEEKLEWTKYPFGA 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,448
Number of Sequences: 438
Number of extensions: 3835
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)