Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16g09
(794 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL161659-2|CAI15136.1| 345|Homo sapiens chromosome 20 open read... 205 2e-52
AL109657-2|CAI22985.1| 345|Homo sapiens chromosome 20 open read... 205 2e-52
BC073158-1|AAH73158.1| 317|Homo sapiens chromosome 20 open read... 188 2e-47
AL161659-3|CAI15137.1| 317|Homo sapiens chromosome 20 open read... 188 2e-47
AL109657-3|CAI22986.1| 317|Homo sapiens chromosome 20 open read... 188 2e-47
BC005984-1|AAH05984.1| 158|Homo sapiens C20orf7 protein protein. 155 1e-37
AK025977-1|BAB15305.1| 158|Homo sapiens protein ( Homo sapiens ... 155 1e-37
AL365443-7|CAH71450.1| 474|Homo sapiens PRAME family member 8 p... 37 0.096
AL358783-1|CAH73922.1| 474|Homo sapiens PRAME family member 7 p... 37 0.096
AL023753-3|CAA19295.1| 483|Homo sapiens PRAME family member 12 ... 35 0.29
L43619-1|AAC41765.1| 4292|Homo sapiens polycystic kidney disease... 31 4.8
L33243-1|AAC37576.1| 4302|Homo sapiens polycystic kidney disease... 31 4.8
AB064211-1|BAC01839.1| 263|Homo sapiens immunoglobulin lambda l... 30 8.4
>AL161659-2|CAI15136.1| 345|Homo sapiens chromosome 20 open reading
frame 7 protein.
Length = 345
Score = 205 bits (500), Expect = 2e-52
Identities = 109/242 (45%), Positives = 147/242 (60%)
Frame = -3
Query: 750 VSRHFLPDSVEKVTLCDTSRTHLDKAIVGEGVQYEKMIMDEENFELPDDSVDLLVSSLTF 571
++++ +++ K D + L + E + ++ DEE +++ DL+VSSL+
Sbjct: 103 IAQYLNKETIGKFFQADIAENALKNSSETE-IPTVSVLADEEFLPFKENTFDLVVSSLSL 161
Query: 570 HWVNDLPGLFDRIMKCLKPDGVLLACTFGGDTLMELRQALQLSDLERRGGVSPHISPFTR 391
HWVNDLP ++I LKPDGV + FGGDTL ELR +LQL++ ER GG SPHISPFT
Sbjct: 162 HWVNDLPRALEQIHYILKPDGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTA 221
Query: 390 PTDIGGLLNAAGFTLQTVDIDKMTIWYPSAFELMRDLRLAGESNAAHNRSGHLPRDVQFA 211
D+G LL AGF TVD D++ + YP FELM DL+ GESN A NR L RD A
Sbjct: 222 VNDLGHLLGRAGFNTLTVDTDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLA 281
Query: 210 AAAIYDQMYGKDFPERGSRGVPATFEIINFVGWKPDPSQPAPIQRGSGQVSLKDLHKIDE 31
AAA+Y +MY E GS VPAT++I +GWK SQ P +RGS VS +L KI+
Sbjct: 282 AAAVYREMYRN---EDGS--VPATYQIYYMIGWKYHESQARPAERGSATVSFGELGKINN 336
Query: 30 IL 25
++
Sbjct: 337 LM 338
>AL109657-2|CAI22985.1| 345|Homo sapiens chromosome 20 open reading
frame 7 protein.
Length = 345
Score = 205 bits (500), Expect = 2e-52
Identities = 109/242 (45%), Positives = 147/242 (60%)
Frame = -3
Query: 750 VSRHFLPDSVEKVTLCDTSRTHLDKAIVGEGVQYEKMIMDEENFELPDDSVDLLVSSLTF 571
++++ +++ K D + L + E + ++ DEE +++ DL+VSSL+
Sbjct: 103 IAQYLNKETIGKFFQADIAENALKNSSETE-IPTVSVLADEEFLPFKENTFDLVVSSLSL 161
Query: 570 HWVNDLPGLFDRIMKCLKPDGVLLACTFGGDTLMELRQALQLSDLERRGGVSPHISPFTR 391
HWVNDLP ++I LKPDGV + FGGDTL ELR +LQL++ ER GG SPHISPFT
Sbjct: 162 HWVNDLPRALEQIHYILKPDGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTA 221
Query: 390 PTDIGGLLNAAGFTLQTVDIDKMTIWYPSAFELMRDLRLAGESNAAHNRSGHLPRDVQFA 211
D+G LL AGF TVD D++ + YP FELM DL+ GESN A NR L RD A
Sbjct: 222 VNDLGHLLGRAGFNTLTVDTDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLA 281
Query: 210 AAAIYDQMYGKDFPERGSRGVPATFEIINFVGWKPDPSQPAPIQRGSGQVSLKDLHKIDE 31
AAA+Y +MY E GS VPAT++I +GWK SQ P +RGS VS +L KI+
Sbjct: 282 AAAVYREMYRN---EDGS--VPATYQIYYMIGWKYHESQARPAERGSATVSFGELGKINN 336
Query: 30 IL 25
++
Sbjct: 337 LM 338
>BC073158-1|AAH73158.1| 317|Homo sapiens chromosome 20 open reading
frame 7 protein.
Length = 317
Score = 188 bits (459), Expect = 2e-47
Identities = 98/189 (51%), Positives = 119/189 (62%)
Frame = -3
Query: 591 LVSSLTFHWVNDLPGLFDRIMKCLKPDGVLLACTFGGDTLMELRQALQLSDLERRGGVSP 412
L L HWVNDLP ++I LKPDGV + FGGDTL ELR +LQL++ ER GG SP
Sbjct: 127 LQKMLCLHWVNDLPRALEQIHYILKPDGVFIGAMFGGDTLYELRCSLQLAETEREGGFSP 186
Query: 411 HISPFTRPTDIGGLLNAAGFTLQTVDIDKMTIWYPSAFELMRDLRLAGESNAAHNRSGHL 232
HISPFT D+G LL AGF TVD D++ + YP FELM DL+ GESN A NR L
Sbjct: 187 HISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNYPGMFELMEDLQGMGESNCAWNRKALL 246
Query: 231 PRDVQFAAAAIYDQMYGKDFPERGSRGVPATFEIINFVGWKPDPSQPAPIQRGSGQVSLK 52
RD AAAA+Y +MY E GS VPAT++I +GWK SQ P +RGS VS
Sbjct: 247 HRDTMLAAAAVYREMYRN---EDGS--VPATYQIYYMIGWKYHESQARPAERGSATVSFG 301
Query: 51 DLHKIDEIL 25
+L KI+ ++
Sbjct: 302 ELGKINNLM 310
>AL161659-3|CAI15137.1| 317|Homo sapiens chromosome 20 open reading
frame 7 protein.
Length = 317
Score = 188 bits (459), Expect = 2e-47
Identities = 98/189 (51%), Positives = 119/189 (62%)
Frame = -3
Query: 591 LVSSLTFHWVNDLPGLFDRIMKCLKPDGVLLACTFGGDTLMELRQALQLSDLERRGGVSP 412
L L HWVNDLP ++I LKPDGV + FGGDTL ELR +LQL++ ER GG SP
Sbjct: 127 LQKMLCLHWVNDLPRALEQIHYILKPDGVFIGAMFGGDTLYELRCSLQLAETEREGGFSP 186
Query: 411 HISPFTRPTDIGGLLNAAGFTLQTVDIDKMTIWYPSAFELMRDLRLAGESNAAHNRSGHL 232
HISPFT D+G LL AGF TVD D++ + YP FELM DL+ GESN A NR L
Sbjct: 187 HISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNYPGMFELMEDLQGMGESNCAWNRKALL 246
Query: 231 PRDVQFAAAAIYDQMYGKDFPERGSRGVPATFEIINFVGWKPDPSQPAPIQRGSGQVSLK 52
RD AAAA+Y +MY E GS VPAT++I +GWK SQ P +RGS VS
Sbjct: 247 HRDTMLAAAAVYREMYRN---EDGS--VPATYQIYYMIGWKYHESQARPAERGSATVSFG 301
Query: 51 DLHKIDEIL 25
+L KI+ ++
Sbjct: 302 ELGKINNLM 310
>AL109657-3|CAI22986.1| 317|Homo sapiens chromosome 20 open reading
frame 7 protein.
Length = 317
Score = 188 bits (459), Expect = 2e-47
Identities = 98/189 (51%), Positives = 119/189 (62%)
Frame = -3
Query: 591 LVSSLTFHWVNDLPGLFDRIMKCLKPDGVLLACTFGGDTLMELRQALQLSDLERRGGVSP 412
L L HWVNDLP ++I LKPDGV + FGGDTL ELR +LQL++ ER GG SP
Sbjct: 127 LQKMLCLHWVNDLPRALEQIHYILKPDGVFIGAMFGGDTLYELRCSLQLAETEREGGFSP 186
Query: 411 HISPFTRPTDIGGLLNAAGFTLQTVDIDKMTIWYPSAFELMRDLRLAGESNAAHNRSGHL 232
HISPFT D+G LL AGF TVD D++ + YP FELM DL+ GESN A NR L
Sbjct: 187 HISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNYPGMFELMEDLQGMGESNCAWNRKALL 246
Query: 231 PRDVQFAAAAIYDQMYGKDFPERGSRGVPATFEIINFVGWKPDPSQPAPIQRGSGQVSLK 52
RD AAAA+Y +MY E GS VPAT++I +GWK SQ P +RGS VS
Sbjct: 247 HRDTMLAAAAVYREMYRN---EDGS--VPATYQIYYMIGWKYHESQARPAERGSATVSFG 301
Query: 51 DLHKIDEIL 25
+L KI+ ++
Sbjct: 302 ELGKINNLM 310
>BC005984-1|AAH05984.1| 158|Homo sapiens C20orf7 protein protein.
Length = 158
Score = 155 bits (377), Expect = 1e-37
Identities = 82/155 (52%), Positives = 100/155 (64%)
Frame = -3
Query: 489 FGGDTLMELRQALQLSDLERRGGVSPHISPFTRPTDIGGLLNAAGFTLQTVDIDKMTIWY 310
FGGDTL ELR +LQL++ ER GG SPHISPFT D+G LL AGF TVD D++ + Y
Sbjct: 2 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY 61
Query: 309 PSAFELMRDLRLAGESNAAHNRSGHLPRDVQFAAAAIYDQMYGKDFPERGSRGVPATFEI 130
P FELM DL+ GESN A NR L RD AAAA+Y +MY E GS VPAT++I
Sbjct: 62 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRN---EDGS--VPATYQI 116
Query: 129 INFVGWKPDPSQPAPIQRGSGQVSLKDLHKIDEIL 25
+GWK SQ P +RGS VS +L KI+ ++
Sbjct: 117 YYMIGWKYHESQARPAERGSATVSFGELGKINNLM 151
>AK025977-1|BAB15305.1| 158|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22324 fis, clone HRC05551. ).
Length = 158
Score = 155 bits (377), Expect = 1e-37
Identities = 82/155 (52%), Positives = 100/155 (64%)
Frame = -3
Query: 489 FGGDTLMELRQALQLSDLERRGGVSPHISPFTRPTDIGGLLNAAGFTLQTVDIDKMTIWY 310
FGGDTL ELR +LQL++ ER GG SPHISPFT D+G LL AGF TVD D++ + Y
Sbjct: 2 FGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY 61
Query: 309 PSAFELMRDLRLAGESNAAHNRSGHLPRDVQFAAAAIYDQMYGKDFPERGSRGVPATFEI 130
P FELM DL+ GESN A NR L RD AAAA+Y +MY E GS VPAT++I
Sbjct: 62 PGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRN---EDGS--VPATYQI 116
Query: 129 INFVGWKPDPSQPAPIQRGSGQVSLKDLHKIDEIL 25
+GWK SQ P +RGS VS +L KI+ ++
Sbjct: 117 YYMIGWKYHESQARPAERGSATVSFGELGKINNLM 151
>AL365443-7|CAH71450.1| 474|Homo sapiens PRAME family member 8
protein.
Length = 474
Score = 36.7 bits (81), Expect = 0.096
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = -3
Query: 582 SLTFHWVNDLPGLFDRIMKCLKPD---GVLLACTFGGDTLMELR---QALQLSDLERRGG 421
+L+ H V+ L G D++++CL+ V+ C L L QL +L+ RG
Sbjct: 270 NLSMHSVSFLEGHLDQLLRCLQASLEMVVMTDCLLSESDLKHLSWCPSIRQLKELDLRGV 329
Query: 420 VSPHISPFTRPTDIGGLLNAAGFTLQTVDID 328
H SP + GLL TLQT+D++
Sbjct: 330 TLTHFSP----EPLTGLLEQVVATLQTLDLE 356
>AL358783-1|CAH73922.1| 474|Homo sapiens PRAME family member 7
protein.
Length = 474
Score = 36.7 bits (81), Expect = 0.096
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = -3
Query: 582 SLTFHWVNDLPGLFDRIMKCLKPD---GVLLACTFGGDTLMELR---QALQLSDLERRGG 421
+L+ H V+ L G D++++CL+ V+ C L L QL +L+ RG
Sbjct: 270 NLSMHSVSFLEGHLDQLLRCLQASLEMVVMTDCLLSESDLKHLSWCPSIRQLKELDLRGV 329
Query: 420 VSPHISPFTRPTDIGGLLNAAGFTLQTVDID 328
H SP + GLL TLQT+D++
Sbjct: 330 TLTHFSP----EPLTGLLEQVVATLQTLDLE 356
>AL023753-3|CAA19295.1| 483|Homo sapiens PRAME family member 12
protein.
Length = 483
Score = 35.1 bits (77), Expect = 0.29
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Frame = -3
Query: 579 LTFHWVNDLPGLFDRIMKCLKPD---GVLLACTFGGDTLMELR---QALQLSDLERRGGV 418
L H V+ L G D++++CL+ V+ C L L QL +L+ RG
Sbjct: 271 LYMHSVSFLEGHLDQLLRCLQAPLETVVMTECLLSESDLKHLSWCPSIRQLKELDLRGIT 330
Query: 417 SPHISPFTRPTDIGGLLNAAGFTLQTVDID 328
H SP P + LL A TLQT+D++
Sbjct: 331 LTHFSP--EPLSV--LLEQAEATLQTLDLE 356
>L43619-1|AAC41765.1| 4292|Homo sapiens polycystic kidney disease 1
protein protein.
Length = 4292
Score = 31.1 bits (67), Expect = 4.8
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -1
Query: 317 FGTPVPLS*CAT*GW-LARATQPTIVRDICPGTCSSLPPPYTTRCTGRT 174
F T L+ + GW L A QP+ C CS PPP C G T
Sbjct: 215 FSTGQGLAALSEQGWCLCGAAQPSSASFACLSLCSGPPPPPAPTCRGPT 263
>L33243-1|AAC37576.1| 4302|Homo sapiens polycystic kidney disease 1
protein protein.
Length = 4302
Score = 31.1 bits (67), Expect = 4.8
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -1
Query: 317 FGTPVPLS*CAT*GW-LARATQPTIVRDICPGTCSSLPPPYTTRCTGRT 174
F T L+ + GW L A QP+ C CS PPP C G T
Sbjct: 215 FSTGQGLAALSEQGWCLCGAAQPSSASFACLSLCSGPPPPPAPTCRGPT 263
>AB064211-1|BAC01839.1| 263|Homo sapiens immunoglobulin lambda
light chain VLJ region protein.
Length = 263
Score = 30.3 bits (65), Expect = 8.4
Identities = 19/39 (48%), Positives = 22/39 (56%)
Frame = +1
Query: 118 DEIDNLERSRDSPGTPLGEVLPVHLVVYGGGSELHVPGQ 234
DE D SRDS G HLVV+GGG++L V GQ
Sbjct: 103 DEADYYCNSRDSSGN--------HLVVFGGGTKLTVLGQ 133
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,274,723
Number of Sequences: 237096
Number of extensions: 3866914
Number of successful extensions: 12485
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12412
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -