Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16g09
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   7.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   10.0 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   10.0 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   10.0 

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -3

Query: 153  GVP-ATFEIINFVGWKPDPSQPAPIQRGSGQV 61
            G+P   F   NF  W P P  P+P   G+  V
Sbjct: 1152 GMPHLPFTPFNF--WNPPPFMPSPFMAGAPNV 1181


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 705 TVSPSPRCPAGNAVIHP 755
           TV+PS R  A  A+ HP
Sbjct: 152 TVNPSKRITASEALKHP 168


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 157 GTPLGEVLPVHLVVYGGG 210
           G P   +LP+ + +YGGG
Sbjct: 151 GGPRNGLLPLLVWIYGGG 168


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 269 PANLRSRINSKALGYQIVILSMSTVCNVKPAALSKPP 379
           P N+ + + S ++    VI + + V   +P ++S PP
Sbjct: 730 PTNVATTVTSMSIDQSTVIQTGANVNLWQPLSVSIPP 766


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 157 GTPLGEVLPVHLVVYGGG 210
           G P   +LP+ + +YGGG
Sbjct: 151 GGPRNGLLPLLVWIYGGG 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,357
Number of Sequences: 438
Number of extensions: 6272
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)