Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16g05
         (867 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              25   0.90 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.6  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   4.8  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   6.4  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   6.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   8.4  

>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 3   RSVSK*KIKMKNQKENYKNY 62
           R  S+ +IK+ N++EN++NY
Sbjct: 49  RDSSEARIKLINEEENFRNY 68


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = -2

Query: 305 TIRQLQEKLDCAKATYNALEAASIKITMDLNDKNQSLETDTRALEMRAALVPKRPQG 135
           T+R+LQE L         LEA   +   ++ +    L+   +   ++ A  P+R  G
Sbjct: 3   TLRELQELLRVKDEKIVELEALLCRRDAEIQELRSHLDKFLQCASLKLAFEPRRNPG 59


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +2

Query: 122 DFYPCPVVSWVLKQPSFPALEYQFPTIGFCR*GPS*F**MQPPRHCR 262
           +F P P+  W+  Q   P   Y  P   F R  P      +PP + R
Sbjct: 348 NFPPRPMGPWISMQEQIPRFRYIGPPTPFPRFIPPNVYRFRPPLNPR 394


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +3

Query: 504 PIKLVPGTLSVIDASTEHIVCHIS-LSLKCVPRATPGYEE 620
           P ++  G   V+D  T HI C  + +  KC  R     EE
Sbjct: 350 PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEE 389


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +3

Query: 504 PIKLVPGTLSVIDASTEHIVCHIS-LSLKCVPRATPGYEE 620
           P ++  G   V+D  T HI C  + +  KC  R     EE
Sbjct: 61  PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEE 100


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 494 KMEENMEKLGTELKTMGE 441
           K+EE+M KL  E+K   E
Sbjct: 376 KLEESMRKLDEEMKRTDE 393


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,398
Number of Sequences: 438
Number of extensions: 4969
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)