Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16g02
(909 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 56 5e-08
05_01_0021 - 148084-148191,148387-148488,148641-148727,148845-14... 48 1e-05
12_02_1219 + 27096477-27096590,27096704-27097078 29 6.7
04_03_0521 + 16765347-16767324,16769202-16769392 29 6.7
05_06_0194 + 26287854-26288233,26289810-26290044 28 8.9
05_04_0181 + 18799445-18799593,18801112-18801163,18801964-188019... 28 8.9
03_05_0630 + 26260159-26260272,26260520-26260894 28 8.9
01_06_0525 - 30014497-30014731,30015509-30015573 28 8.9
>01_01_0020 +
147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 55.6 bits (128), Expect = 5e-08
Identities = 40/146 (27%), Positives = 70/146 (47%)
Frame = -3
Query: 862 RKLLYXVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVK 683
R +L +L AAA ++ D P L K VE + V L+N GSA A +V
Sbjct: 5 RSILLLLLLAAAASASADAPFLVAHKKVSLSRPKPGVERL--AVSLDLYNQGSATAYDVS 62
Query: 682 LVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASEDA 503
+ D+ + + F +V G+++ ++R+ P SH + + G F S A +TY+ A
Sbjct: 63 INDDTWPKEAFELVSGEMSKTLERLDPGVTASHAFVLETKVQGRFQGSPAVITYRVPTKA 122
Query: 502 TDVQYSISSAPGEGAIVAFKDYDRKF 425
+Q + S+ ++A + ++KF
Sbjct: 123 A-LQEAYSTPILALDVLAERPPEKKF 147
>05_01_0021 -
148084-148191,148387-148488,148641-148727,148845-148979,
149109-149324,149772-150043,151346-151394,151521-151526,
151657-151728,152077-152185,152272-152370,153186-153364
Length = 477
Score = 48.0 bits (109), Expect = 1e-05
Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 4/153 (2%)
Frame = -3
Query: 871 EWQRKLLYXVLFIA---AAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSA 701
+W R LL+ +L + AA + D P + + K L++ + V L+N GSA
Sbjct: 4 QW-RSLLFLLLLLLVPFAAAAGQDAPFV--VAQKKVALSRPGPGVERLAVTLNLYNQGSA 60
Query: 700 PAVEVKLVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTY 521
A +V L D+ + + F ++ G + ++++ P SH + + G F S A +TY
Sbjct: 61 TAYDVSLNDDSWPQEAFQLISGTTSKIVEKLDPGATASHNFILETKVQGKFQGSPAIITY 120
Query: 520 KA-SEDATDVQYSISSAPGEGAIVAFKDYDRKF 425
+ ++ A YS P + I+A + +KF
Sbjct: 121 RVPTKAALQEAYSTPMFPLD--ILAERPPQQKF 151
>12_02_1219 + 27096477-27096590,27096704-27097078
Length = 162
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 312 GFESFS--YLLFDEYQRPNGMARDGRVITANAAQSR 413
GF +FS + D + NG DGR IT N AQSR
Sbjct: 52 GFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQSR 87
>04_03_0521 + 16765347-16767324,16769202-16769392
Length = 722
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -3
Query: 787 LVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLVDNGFHPDVFT 647
++ + VL K L+ N I + + A ++ K+VD+G PD+FT
Sbjct: 74 MMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFT 120
>05_06_0194 + 26287854-26288233,26289810-26290044
Length = 204
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 173 IYGCTNIVYVFVYKKSCYPTAEVIFF 96
+ GC IV V +Y C PTAE + +
Sbjct: 158 VRGCDRIVPVDIYVPGCPPTAEALLY 183
>05_04_0181 +
18799445-18799593,18801112-18801163,18801964-18801999,
18802098-18802233,18802313-18802512
Length = 190
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 640 GGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTY 521
GG TA+ + Q + +T + YGY NFS EV +
Sbjct: 150 GGSSTAQHEIGPSQLDEPPPITQPTQDYGYINFSGVEVAH 189
>03_05_0630 + 26260159-26260272,26260520-26260894
Length = 162
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 312 GFESFS--YLLFDEYQRPNGMARDGRVITANAAQSR 413
GF +FS + D + NG DGR IT N AQSR
Sbjct: 52 GFVTFSSEQSMRDAIEGMNGKELDGRNITVNEAQSR 87
>01_06_0525 - 30014497-30014731,30015509-30015573
Length = 99
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 173 IYGCTNIVYVFVYKKSCYPTAEVIFF 96
+ GC IV V +Y C PTAE + +
Sbjct: 53 VRGCDRIVPVDIYVPGCPPTAEALLY 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,752,512
Number of Sequences: 37544
Number of extensions: 448826
Number of successful extensions: 1119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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