Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16g02
(909 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X74104-1|CAA52207.1| 183|Homo sapiens translocon-associated pro... 177 5e-44
D37991-1|BAA07206.1| 183|Homo sapiens beta-signal sequence rece... 177 5e-44
CR456973-1|CAG33254.1| 183|Homo sapiens SSR2 protein. 177 5e-44
BC000341-1|AAH00341.2| 183|Homo sapiens signal sequence recepto... 177 5e-44
AL355388-11|CAH72631.1| 202|Homo sapiens signal sequence recept... 177 5e-44
AK222600-1|BAD96320.1| 183|Homo sapiens signal sequence recepto... 176 1e-43
BX649192-1|CAE46211.1| 143|Homo sapiens hypothetical protein pr... 115 3e-25
AL355388-12|CAH72632.1| 146|Homo sapiens signal sequence recept... 115 3e-25
>X74104-1|CAA52207.1| 183|Homo sapiens translocon-associated
protein protein.
Length = 183
Score = 177 bits (431), Expect = 5e-44
Identities = 87/172 (50%), Positives = 118/172 (68%)
Frame = -3
Query: 862 RKLLYXVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVK 683
R L + VL + A A++ ARLL SK +LN+Y VE D+ ++Y ++NVGS+ A++V+
Sbjct: 2 RLLSFVVLALFAVTQAEEG---ARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVE 58
Query: 682 LVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASEDA 503
L D+ F P+ F +V G L + DRIAP +NVSH V +R K GYFNF+SA +TY A ED
Sbjct: 59 LSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDG 118
Query: 502 TDVQYSISSAPGEGAIVAFKDYDRKFSSHILDWAAFAVMTLPSLAIPFGLWY 347
V +SAPG+G I+A +++DR+FS H LDWAAF VMTLPS+ IP LWY
Sbjct: 119 -PVVIGSTSAPGQGGILAQREFDRRFSPHFLDWAAFGVMTLPSIGIPLLLWY 169
>D37991-1|BAA07206.1| 183|Homo sapiens beta-signal sequence
receptor protein.
Length = 183
Score = 177 bits (431), Expect = 5e-44
Identities = 87/172 (50%), Positives = 118/172 (68%)
Frame = -3
Query: 862 RKLLYXVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVK 683
R L + VL + A A++ ARLL SK +LN+Y VE D+ ++Y ++NVGS+ A++V+
Sbjct: 2 RLLSFVVLALFAVTQAEEG---ARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVE 58
Query: 682 LVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASEDA 503
L D+ F P+ F +V G L + DRIAP +NVSH V +R K GYFNF+SA +TY A ED
Sbjct: 59 LSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDG 118
Query: 502 TDVQYSISSAPGEGAIVAFKDYDRKFSSHILDWAAFAVMTLPSLAIPFGLWY 347
V +SAPG+G I+A +++DR+FS H LDWAAF VMTLPS+ IP LWY
Sbjct: 119 -PVVIGSTSAPGQGGILAQREFDRRFSPHFLDWAAFGVMTLPSIGIPLLLWY 169
>CR456973-1|CAG33254.1| 183|Homo sapiens SSR2 protein.
Length = 183
Score = 177 bits (431), Expect = 5e-44
Identities = 87/172 (50%), Positives = 118/172 (68%)
Frame = -3
Query: 862 RKLLYXVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVK 683
R L + VL + A A++ ARLL SK +LN+Y VE D+ ++Y ++NVGS+ A++V+
Sbjct: 2 RLLSFVVLALFAVTQAEEG---ARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVE 58
Query: 682 LVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASEDA 503
L D+ F P+ F +V G L + DRIAP +NVSH V +R K GYFNF+SA +TY A ED
Sbjct: 59 LSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDG 118
Query: 502 TDVQYSISSAPGEGAIVAFKDYDRKFSSHILDWAAFAVMTLPSLAIPFGLWY 347
V +SAPG+G I+A +++DR+FS H LDWAAF VMTLPS+ IP LWY
Sbjct: 119 -PVVIGSTSAPGQGGILAQREFDRRFSPHFLDWAAFGVMTLPSIGIPLLLWY 169
>BC000341-1|AAH00341.2| 183|Homo sapiens signal sequence receptor,
beta (translocon-associated protein beta) protein.
Length = 183
Score = 177 bits (431), Expect = 5e-44
Identities = 87/172 (50%), Positives = 118/172 (68%)
Frame = -3
Query: 862 RKLLYXVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVK 683
R L + VL + A A++ ARLL SK +LN+Y VE D+ ++Y ++NVGS+ A++V+
Sbjct: 2 RLLSFVVLALFAVTQAEEG---ARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVE 58
Query: 682 LVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASEDA 503
L D+ F P+ F +V G L + DRIAP +NVSH V +R K GYFNF+SA +TY A ED
Sbjct: 59 LSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDG 118
Query: 502 TDVQYSISSAPGEGAIVAFKDYDRKFSSHILDWAAFAVMTLPSLAIPFGLWY 347
V +SAPG+G I+A +++DR+FS H LDWAAF VMTLPS+ IP LWY
Sbjct: 119 -PVVIGSTSAPGQGGILAQREFDRRFSPHFLDWAAFGVMTLPSIGIPLLLWY 169
>AL355388-11|CAH72631.1| 202|Homo sapiens signal sequence receptor,
beta (translocon-associated protein beta) protein.
Length = 202
Score = 177 bits (431), Expect = 5e-44
Identities = 87/172 (50%), Positives = 118/172 (68%)
Frame = -3
Query: 862 RKLLYXVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVK 683
R L + VL + A A++ ARLL SK +LN+Y VE D+ ++Y ++NVGS+ A++V+
Sbjct: 21 RLLSFVVLALFAVTQAEEG---ARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVE 77
Query: 682 LVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASEDA 503
L D+ F P+ F +V G L + DRIAP +NVSH V +R K GYFNF+SA +TY A ED
Sbjct: 78 LSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDG 137
Query: 502 TDVQYSISSAPGEGAIVAFKDYDRKFSSHILDWAAFAVMTLPSLAIPFGLWY 347
V +SAPG+G I+A +++DR+FS H LDWAAF VMTLPS+ IP LWY
Sbjct: 138 -PVVIGSTSAPGQGGILAQREFDRRFSPHFLDWAAFGVMTLPSIGIPLLLWY 188
>AK222600-1|BAD96320.1| 183|Homo sapiens signal sequence receptor,
beta precursor variant protein.
Length = 183
Score = 176 bits (428), Expect = 1e-43
Identities = 87/172 (50%), Positives = 117/172 (68%)
Frame = -3
Query: 862 RKLLYXVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVK 683
R L + VL + A A++ ARLL SK +LN+Y VE D+ ++Y +NVGS+ A++V+
Sbjct: 2 RLLSFVVLALFAVTQAEEG---ARLLASKSLLNRYAVEGRDLTLQYNTYNVGSSAALDVE 58
Query: 682 LVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASEDA 503
L D+ F P+ F +V G L + DRIAP +NVSH V +R K GYFNF+SA +TY A ED
Sbjct: 59 LSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDG 118
Query: 502 TDVQYSISSAPGEGAIVAFKDYDRKFSSHILDWAAFAVMTLPSLAIPFGLWY 347
V +SAPG+G I+A +++DR+FS H LDWAAF VMTLPS+ IP LWY
Sbjct: 119 -PVVIGSTSAPGQGGILAQREFDRRFSPHFLDWAAFGVMTLPSIGIPLLLWY 169
>BX649192-1|CAE46211.1| 143|Homo sapiens hypothetical protein
protein.
Length = 143
Score = 115 bits (276), Expect = 3e-25
Identities = 57/119 (47%), Positives = 80/119 (67%)
Frame = -3
Query: 862 RKLLYXVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVK 683
R L + VL + A A++ ARLL SK +LN+Y VE D+ ++Y ++NVGS+ A++V+
Sbjct: 23 RLLSFVVLALFAVTQAEEG---ARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVE 79
Query: 682 LVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASED 506
L D+ F P+ F +V G L + DRIAP +NVSH V +R K GYFNF+SA +TY A ED
Sbjct: 80 LSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQED 138
>AL355388-12|CAH72632.1| 146|Homo sapiens signal sequence receptor,
beta (translocon-associated protein beta) protein.
Length = 146
Score = 115 bits (276), Expect = 3e-25
Identities = 57/119 (47%), Positives = 80/119 (67%)
Frame = -3
Query: 862 RKLLYXVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVK 683
R L + VL + A A++ ARLL SK +LN+Y VE D+ ++Y ++NVGS+ A++V+
Sbjct: 21 RLLSFVVLALFAVTQAEEG---ARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVE 77
Query: 682 LVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASED 506
L D+ F P+ F +V G L + DRIAP +NVSH V +R K GYFNF+SA +TY A ED
Sbjct: 78 LSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQED 136
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,609,398
Number of Sequences: 237096
Number of extensions: 2517377
Number of successful extensions: 4679
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4673
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11770329464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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