Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16g02
         (909 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF160923-1|AAD46863.1|  190|Drosophila melanogaster BcDNA.LD1045...   219   4e-57
AE014296-2644|AAF49532.2|  190|Drosophila melanogaster CG5474-PA...   219   4e-57
AY052082-1|AAK93506.1|  982|Drosophila melanogaster SD03378p pro...    31   2.9  
AE014134-684|AAF51056.2|  982|Drosophila melanogaster CG3964-PA,...    31   2.9  
AE014134-683|AAN10363.1|  989|Drosophila melanogaster CG3964-PB,...    31   2.9  
AY095062-1|AAM11390.1|  512|Drosophila melanogaster RE01809p pro...    30   5.0  
AE014134-207|AAF51413.1|  512|Drosophila melanogaster CG4726-PA ...    30   5.0  

>AF160923-1|AAD46863.1|  190|Drosophila melanogaster BcDNA.LD10457
           protein.
          Length = 190

 Score =  219 bits (535), Expect = 4e-57
 Identities = 100/169 (59%), Positives = 131/169 (77%)
 Frame = -3

Query: 853 LYXVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLVD 674
           L+ +  + +   ++DE   ARLLVSKQ+LNKYLVE  D+LV+YT+FNVGS  A +V+LVD
Sbjct: 8   LFALCAVFSTCLSEDE-TRARLLVSKQILNKYLVEKSDLLVRYTIFNVGSGAATKVRLVD 66

Query: 673 NGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASEDATDV 494
           +GFHP+ F VVGGQ TA +DRIAPQTN +HV+ VR   +GYFNF++AEV+YKA E++  +
Sbjct: 67  SGFHPEAFDVVGGQPTAVVDRIAPQTNFTHVLVVRPKAFGYFNFTAAEVSYKAVEESETL 126

Query: 493 QYSISSAPGEGAIVAFKDYDRKFSSHILDWAAFAVMTLPSLAIPFGLWY 347
           Q ++SS PGEG IV   +Y+++FSSH  DW AFAVMTLPSLAIP  LW+
Sbjct: 127 QLAVSSEPGEGGIVNLNEYNKRFSSHFFDWVAFAVMTLPSLAIPLALWH 175


>AE014296-2644|AAF49532.2|  190|Drosophila melanogaster CG5474-PA
           protein.
          Length = 190

 Score =  219 bits (535), Expect = 4e-57
 Identities = 100/169 (59%), Positives = 131/169 (77%)
 Frame = -3

Query: 853 LYXVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLVD 674
           L+ +  + +   ++DE   ARLLVSKQ+LNKYLVE  D+LV+YT+FNVGS  A +V+LVD
Sbjct: 8   LFALCAVFSTCLSEDE-TRARLLVSKQILNKYLVEKSDLLVRYTIFNVGSGAATKVRLVD 66

Query: 673 NGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASEDATDV 494
           +GFHP+ F VVGGQ TA +DRIAPQTN +HV+ VR   +GYFNF++AEV+YKA E++  +
Sbjct: 67  SGFHPEAFDVVGGQPTAVVDRIAPQTNFTHVLVVRPKAFGYFNFTAAEVSYKAVEESETL 126

Query: 493 QYSISSAPGEGAIVAFKDYDRKFSSHILDWAAFAVMTLPSLAIPFGLWY 347
           Q ++SS PGEG IV   +Y+++FSSH  DW AFAVMTLPSLAIP  LW+
Sbjct: 127 QLAVSSEPGEGGIVNLNEYNKRFSSHFFDWVAFAVMTLPSLAIPLALWH 175


>AY052082-1|AAK93506.1|  982|Drosophila melanogaster SD03378p
           protein.
          Length = 982

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 561 STAISTSARRKSHTKP--AKTPQTSNIRSAVLQEREPS*PSKIMIESSPRTSSIGRHSQL 388
           S A     +R +H+ P  AK P  SN+     Q  +PS PSKI++ S   +S +    Q 
Sbjct: 224 SAANGNGPKRSAHSPPIQAKVPP-SNMSCPSTQTLKPSPPSKIVVNSFHGSSMLSTQQQE 282

Query: 387 *PSR 376
             SR
Sbjct: 283 EKSR 286


>AE014134-684|AAF51056.2|  982|Drosophila melanogaster CG3964-PA,
           isoform A protein.
          Length = 982

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 561 STAISTSARRKSHTKP--AKTPQTSNIRSAVLQEREPS*PSKIMIESSPRTSSIGRHSQL 388
           S A     +R +H+ P  AK P  SN+     Q  +PS PSKI++ S   +S +    Q 
Sbjct: 224 SAANGNGPKRSAHSPPIQAKVPP-SNMSCPSTQTLKPSPPSKIVVNSFHGSSMLSTQQQE 282

Query: 387 *PSR 376
             SR
Sbjct: 283 EKSR 286


>AE014134-683|AAN10363.1|  989|Drosophila melanogaster CG3964-PB,
           isoform B protein.
          Length = 989

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 561 STAISTSARRKSHTKP--AKTPQTSNIRSAVLQEREPS*PSKIMIESSPRTSSIGRHSQL 388
           S A     +R +H+ P  AK P  SN+     Q  +PS PSKI++ S   +S +    Q 
Sbjct: 224 SAANGNGPKRSAHSPPIQAKVPP-SNMSCPSTQTLKPSPPSKIVVNSFHGSSMLSTQQQE 282

Query: 387 *PSR 376
             SR
Sbjct: 283 EKSR 286


>AY095062-1|AAM11390.1|  512|Drosophila melanogaster RE01809p
           protein.
          Length = 512

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 256 QHRPN*LHYNKNLTSVPFWVLKASHICS 339
           +H P  + + K  TSVPFW +  +H CS
Sbjct: 276 EHHPA-VPWGKVFTSVPFWAILIAHTCS 302


>AE014134-207|AAF51413.1|  512|Drosophila melanogaster CG4726-PA
           protein.
          Length = 512

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 256 QHRPN*LHYNKNLTSVPFWVLKASHICS 339
           +H P  + + K  TSVPFW +  +H CS
Sbjct: 276 EHHPA-VPWGKVFTSVPFWAILIAHTCS 302


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,720,049
Number of Sequences: 53049
Number of extensions: 788670
Number of successful extensions: 1648
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1647
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4443987051
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)