Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16g01
(861 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 353 1e-98
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 345 5e-96
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 198 1e-51
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 128 1e-30
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 31 0.21
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 27 3.4
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 4.5
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 6.0
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi... 26 6.0
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 26 7.9
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 353 bits (869), Expect = 1e-98
Identities = 152/267 (56%), Positives = 208/267 (77%)
Frame = -3
Query: 859 YAIYPAPKISPIIVESYNAVLTSHACMNTEDVCFLFDNEALYDILARSLEVPRPTYTNLN 680
+++YPAP++S +VE YN+VLT+HA ++ D F+ DNEA YDI R+L++ RPTY NLN
Sbjct: 173 FSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLN 232
Query: 679 RLIAQVVSCMTASIRFKGSLNVDLVEFKTNLIPFPRIHFPLVTFAPFVSPSRACHETMTT 500
RLIAQVVS +TAS+RF GSLNVDL EF+TNL+P+PRIHFPLVT++P VS ++A HE+ +
Sbjct: 233 RLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSV 292
Query: 499 NQLMMSCFEPANQMVKCDPRKGQYISCCLLFRGDVNPNDINATINHVKNSRSIKFVSWSP 320
++ CFEP NQMVKCDPR G+Y++ CLL+RGDV P D+ A + +K+ R+I+FV W P
Sbjct: 293 QEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCP 352
Query: 319 TGFKIGLNYQPPTTVPGGDLAAMQRAAVMVSNSSAIRVAWERICKKFSVMFAKRAFVHHY 140
TGFKIG+ Y+PP VPG +A + RA M+SN+++I AW R+ KF +M++KRAFVH Y
Sbjct: 353 TGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWY 412
Query: 139 IGEGLEEGEFSNALQNIKALSNDYKEI 59
+GEG+EEGEFS A +++ AL DY+E+
Sbjct: 413 VGEGMEEGEFSEAREDLAALERDYEEV 439
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 345 bits (848), Expect = 5e-96
Identities = 148/267 (55%), Positives = 207/267 (77%)
Frame = -3
Query: 859 YAIYPAPKISPIIVESYNAVLTSHACMNTEDVCFLFDNEALYDILARSLEVPRPTYTNLN 680
+++YPAP++S +VE YN+VLT+HA ++ D F+ DNE+ YDI R+L++ RP+Y NLN
Sbjct: 169 FSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLN 228
Query: 679 RLIAQVVSCMTASIRFKGSLNVDLVEFKTNLIPFPRIHFPLVTFAPFVSPSRACHETMTT 500
RLIAQVVS +TAS+RF+GSLNVDL EF+TNL+P+PRIHFPLVT+AP VS ++A HE+ +
Sbjct: 229 RLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSV 288
Query: 499 NQLMMSCFEPANQMVKCDPRKGQYISCCLLFRGDVNPNDINATINHVKNSRSIKFVSWSP 320
++ CFEP NQMVKCDPR G+Y++ CLL+RGDV P D+ A + +K R+I+FV W P
Sbjct: 289 QEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCP 348
Query: 319 TGFKIGLNYQPPTTVPGGDLAAMQRAAVMVSNSSAIRVAWERICKKFSVMFAKRAFVHHY 140
TGFKIG+ +PP + G ++A + RA M+SN+++I AW R+ KF +M++KRAFVH Y
Sbjct: 349 TGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWY 408
Query: 139 IGEGLEEGEFSNALQNIKALSNDYKEI 59
+GEG+EEGEFS A +++ AL DY+E+
Sbjct: 409 VGEGMEEGEFSEAREDLAALERDYEEV 435
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 198 bits (482), Expect = 1e-51
Identities = 97/268 (36%), Positives = 156/268 (58%)
Frame = -3
Query: 859 YAIYPAPKISPIIVESYNAVLTSHACMNTEDVCFLFDNEALYDILARSLEVPRPTYTNLN 680
+++ PAPK S +VE YNA L+ H + D F DNEAL I A +L++ P+Y +LN
Sbjct: 167 FSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLN 226
Query: 679 RLIAQVVSCMTASIRFKGSLNVDLVEFKTNLIPFPRIHFPLVTFAPFVSPSRACHETMTT 500
L++ V++ +T S RF G LN DL + N++PFPR+HF +V FAP + + + ++
Sbjct: 227 HLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSV 286
Query: 499 NQLMMSCFEPANQMVKCDPRKGQYISCCLLFRGDVNPNDINATINHVKNSRSIKFVSWSP 320
+L F+ N MV DPR G+Y++ LFRG V+ +++ I V+ S FV W P
Sbjct: 287 PELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIP 346
Query: 319 TGFKIGLNYQPPTTVPGGDLAAMQRAAVMVSNSSAIRVAWERICKKFSVMFAKRAFVHHY 140
+ +VP DL + +A + NS++I+ + R+ +FS MF ++AF+H Y
Sbjct: 347 DNV-----LKAVCSVPPKDL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWY 398
Query: 139 IGEGLEEGEFSNALQNIKALSNDYKEIE 56
GEG++E EF+ A N+ L ++Y++ +
Sbjct: 399 TGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 128 bits (309), Expect = 1e-30
Identities = 76/277 (27%), Positives = 141/277 (50%), Gaps = 9/277 (3%)
Frame = -3
Query: 859 YAIYP-APKISPIIVESYNAVLTSHACMNTEDVCFLFDNEALYDILARSLEVPRPTYTNL 683
Y+++P + +S ++V+ YN++L D + DN AL I A L PT+
Sbjct: 169 YSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQ 228
Query: 682 NRLIAQVVSCMTASIRFKGSLNVDLVEFKTNLIPFPRIHFPLVTFAPF----VSPSRACH 515
N+L++ V+S T ++R+ G +N DLV +LIP PR HF L ++ PF V ++A
Sbjct: 229 NQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIR 288
Query: 514 ETMTTNQLMMSCFEPANQMVKCDP-RKGQYISCCLLFRGDVNPNDINATINHVKNSRSIK 338
+T T +M P NQMV +P +K +IS + +G+ +P D++ ++ ++ R
Sbjct: 289 KT-TVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYAS 347
Query: 337 FVSWSPTGFKIGLNYQPPTTVPGGDLAAMQRAAVMVSNSSAIRVAWERICKKFSVMFAKR 158
F+ W P ++ L+ + P ++ + M++N ++I ++R ++ + +
Sbjct: 348 FIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRN 402
Query: 157 AFVHHYIGEGLEE---GEFSNALQNIKALSNDYKEIE 56
AF+ Y E + E EF ++ + L N+Y+ E
Sbjct: 403 AFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYEACE 439
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 31.1 bits (67), Expect = 0.21
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -2
Query: 665 GCFLHDCFDKIQRFSERRSRRI*NKLNSISTDTFSISNICAIC 537
G F HD ++KI +++ N+L SI T+TF +I C
Sbjct: 27 GGFKHDLYEKIIAIEIEVEKKLLNRLKSIQTNTFERPDIIWSC 69
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 27.1 bits (57), Expect = 3.4
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 204 LGKEFAKNFL*CLPNALL-YTIILAKALKRVNSQMRCKILKLCPMTI 67
+G F+KNFL CL N L L +A KRV S++ K+ K P +
Sbjct: 312 IGDIFSKNFLHCLINHLSDEDRYLYRAAKRVTSKLE-KVSKQNPTLV 357
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 162 LANITENFLQILSQATRIAELFETITAALCIAARSPPGTVV 284
LANI+ +S A+ ++F+TI I A +P G VV
Sbjct: 373 LANISPKMQSFVSCASAAKKIFDTIDRVSPINAFTPTGDVV 413
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 412 LFRGDVNPNDINATINHVKNSRSIKFVSWSPTGFKIG 302
L GD+N N+ + I F+ WSPTG +IG
Sbjct: 346 LVSGDMNAAAGNSITFAEAIPQDIGFLPWSPTGGQIG 382
>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 724 ARSLEVPRPTYTNLNRLIAQVVSCMTASIRFK-GSLNVDLVEFKTNLIP 581
A+ E+ + + N N + VV S+RF+ G L E K ++P
Sbjct: 526 AKEREITKEKFRNFNEQVTSVVQVHRESVRFETGVATFLLQEVKKTVLP 574
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/70 (24%), Positives = 34/70 (48%)
Frame = +3
Query: 564 KCIRGNGIKFVLNSTRSTFREPLNLIEAVMQETTWAISLFKFV*VGLGTSNDLARISYNA 743
K I+ G+K V TR R P N++ + + + S ++ +G T D+A +
Sbjct: 29 KLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKSSNNAYIVLGKVTVEDMAAQARAF 88
Query: 744 SLSKRKHTSS 773
+ S+++ T +
Sbjct: 89 NESQKQATET 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,488,915
Number of Sequences: 5004
Number of extensions: 75080
Number of successful extensions: 227
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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