Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16g01
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    25   1.2  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    25   1.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   2.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   2.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   2.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.8  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 380 KCNN*PRKEFKIYQIRFLVTYRF*DWLKLSATYNRPG 270
           KCN   +K      + +L T R  DW +LSA Y+  G
Sbjct: 74  KCNE-KQKHTANKVVNYLKTKRPKDWERLSAKYDSTG 109


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 380 KCNN*PRKEFKIYQIRFLVTYRF*DWLKLSATYNRPG 270
           KCN   +K      + +L T R  DW +LSA Y+  G
Sbjct: 74  KCNE-KQKHTANKVVNYLKTKRPKDWERLSAKYDSTG 109


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 739 LYDILARSLEVPRPTYTNLNRLIAQVVSCMTASIR 635
           +YDILAR +      + N N LI   +   + S+R
Sbjct: 382 MYDILARDILGYNFDFQNKNNLIPSALQSYSTSMR 416


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 739 LYDILARSLEVPRPTYTNLNRLIAQVVSCMTASIR 635
           +YDILAR +      + N N LI   +   + S+R
Sbjct: 382 MYDILARDILGYNFDFQNKNNLIPSALQSYSTSMR 416


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +2

Query: 560 WKMYPWKW 583
           W+ YPW+W
Sbjct: 95  WQQYPWQW 102


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 158 AFGKHHRKFFANSFPSNTYCGTV*NHYCSSLHCR 259
           A G  +R   +++ P N Y     NHY S  H R
Sbjct: 97  ATGLSNRSSTSSNDPKNQYKNQNNNHYTSHQHLR 130


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 343 IKFVSWSPTGFKIGLNYQPPTTVPGGDLAA 254
           +KF SW+  GF++ L  Q      GGD+++
Sbjct: 164 MKFGSWTYDGFQLDLQLQDEA---GGDISS 190


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 343 IKFVSWSPTGFKIGLNY 293
           +KF SW+  GFK+ L +
Sbjct: 169 LKFGSWTYDGFKVDLRH 185


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 498 FVVIVSWHAREGE 536
           FV ++SWH  +GE
Sbjct: 133 FVKVLSWHTDQGE 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,548
Number of Sequences: 438
Number of extensions: 5338
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)