Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f23
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    31   0.13 
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.2  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    28   1.2  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    27   3.7  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   3.7  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    26   4.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   8.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.6  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 247 WVRRGKGPQEAAWAARRGPTHCHRLLAA 330
           W+ +    Q A  A R GP HC+RL ++
Sbjct: 773 WISKANADQRAGRAGRTGPGHCYRLYSS 800


>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 202 RCPAWTWSS-EWSCAAWVRRGKGPQEAAWAA 291
           RCP W W + +     W ++ K  Q   WA+
Sbjct: 36  RCPIWLWPTYDAQTIPWKKKKKSEQHELWAS 66


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/72 (19%), Positives = 32/72 (44%)
 Frame = -1

Query: 523 ETPTSRYDQPNAFLDKLQSKYPMLYSILQNEASPELKQRIDRDRNKTTYRVDYCETGPGA 344
           +TP S YD P++  +  +   P  Y +  N ++         D N    +++  ++   +
Sbjct: 46  KTPRSSYDSPSSSTNSKEHNSPYHYRVPSNNSTRASFGAASTDTNVELPKINLPDSSLSS 105

Query: 343 KFEGLQRAADDS 308
           K +  + A ++S
Sbjct: 106 KLQSCKSACENS 117


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 263 RVPRKPHGLRAGARPTVIGCSLQTLEFSSGSCFAVIYPVSGLVSISV 403
           ++  K H LRA      +GC+L T +  S     +  P+S  +  S+
Sbjct: 192 KLKSKIHKLRAHGTSLKVGCALSTDDVLSNDFLPISAPISSSLGSSI 238


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 445 CCTALGISIEAYLKMHWADRSEMLEFQDSQRLARDTVL 558
           CCT L +S + +   HW    +   F+   R  R+T L
Sbjct: 328 CCTLLCLSPKQFFLKHWISSLDAAFFRVKDRRLRNTGL 365


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 616 AVAASPLQSTAGIGSRAGLVCCMH 687
           AV+ SP+  T   G   GLV C H
Sbjct: 129 AVSQSPIDKTIACGFGGGLVSCYH 152


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 507  RDVGVSGLAATRTGYSFGSRRGPIISFRLQPPSFPGGSC 623
            R  G   +   +TGY+   + G + S  +Q  S P G C
Sbjct: 1744 RPEGYPYVILNQTGYNLSIQYGNLNSSEMQSLSLPSGKC 1782


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
 Frame = -1

Query: 235 TTPRTMSKQGSAGAGSDP----RAKCETTSAVPPLGKS 134
           +TP   +   S G  S P       C T++++PP G S
Sbjct: 314 STPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNS 351



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
 Frame = -1

Query: 235 TTPRTMSKQGSAGAGSDP----RAKCETTSAVPPLGKS 134
           +TP   +   S G  S P       C T++++PP G S
Sbjct: 368 STPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNS 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,333,438
Number of Sequences: 5004
Number of extensions: 72284
Number of successful extensions: 238
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)