Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16f23
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0004 - 40354253-40354353,40354598-40354670,40356196-403563... 32 0.42
12_02_1233 + 27224219-27225607 30 1.7
11_03_0171 + 11111534-11113207 30 1.7
07_01_1037 - 9026198-9026586,9026773-9026937,9027010-9027096,902... 30 1.7
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 30 1.7
01_01_0907 + 7128397-7128497,7129944-7130022,7130470-7130568,713... 30 1.7
04_04_0293 - 24189344-24189350,24189804-24190026,24190411-241905... 29 2.9
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 29 2.9
01_06_0050 + 25967604-25967685,25967780-25967891,25969238-259693... 29 2.9
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 29 3.9
01_06_0650 + 30872350-30872736,30873388-30873639,30873723-308738... 29 3.9
10_06_0161 + 11344712-11344877,11345870-11346084 29 5.2
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558... 29 5.2
03_01_0019 + 167900-168343,168567-168751,169076-169430 29 5.2
02_05_0204 - 26721498-26721545,26721731-26721823,26723822-267239... 29 5.2
01_06_1368 - 36715630-36715698,36715835-36716284 28 6.8
12_02_0990 + 25073910-25074734 28 9.0
10_06_0016 - 9659580-9659771,9659906-9660011,9661567-9661853 28 9.0
10_01_0211 - 2268191-2268247,2268916-2268944,2270892-2271777 28 9.0
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 9.0
09_04_0708 + 19648511-19648808,19649189-19649280,19650850-196510... 28 9.0
09_04_0574 + 18645363-18645870,18645995-18646491,18646631-186466... 28 9.0
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 28 9.0
04_04_0406 + 24978845-24978970,24979073-24979142,24979541-249795... 28 9.0
03_02_0517 + 9054816-9055655 28 9.0
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 28 9.0
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 28 9.0
01_05_0638 - 23871424-23871974,23872154-23872325 28 9.0
>01_07_0004 -
40354253-40354353,40354598-40354670,40356196-40356319,
40357821-40358222,40358704-40358732
Length = 242
Score = 32.3 bits (70), Expect = 0.42
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Frame = +2
Query: 161 CGFAFSPRIATSPSAALLGHGPRSGHARLGSDAARVPRKPHGLRAGARPTVIGCSLQTLE 340
C F FS R+A P +G R+ GSD P + L A A P+ C L+ LE
Sbjct: 110 CRFIFSERLAGHPWGERMGGDGRNA----GSDLHAPPIRTPVLPAHALPS--SCPLEPLE 163
Query: 341 FS-----SGSCFA-VIYPVSGLVSISVDPLL 415
F+ S CFA + P G VS LL
Sbjct: 164 FALLLLPSPFCFANICNPKQGKVSPGSSELL 194
>12_02_1233 + 27224219-27225607
Length = 462
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +2
Query: 602 LLPRRQLRHLPSRVLRASAVGRASYAACMLGRTLILDQTVLVCQXR 739
LLP LRHLP R L AS S+ + R+L+ +L C R
Sbjct: 3 LLPDDVLRHLPRRSLAASRCVCQSWRVIIDDRSLLATAALLPCTLR 48
>11_03_0171 + 11111534-11113207
Length = 557
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = -1
Query: 301 GPCAQPMRLPGDPCRVGPKPRMTTPRTMSKQGSAGAGSDPRAKCETTSAVPPLGKSEYQD 122
G C P+++P CR P P +TP S GS PR +T+ V L
Sbjct: 276 GLCGFPLQVP---CRAAP-PSSSTPPPPSAAGSISGAGGPRQPVKTSLIV--LISVADAA 329
Query: 121 GVSKLGAIIM 92
GV+ +G I++
Sbjct: 330 GVALIGVIVV 339
>07_01_1037 -
9026198-9026586,9026773-9026937,9027010-9027096,
9027173-9027245,9027947-9028012,9028096-9028194,
9028710-9028772,9028959-9029345
Length = 442
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 279 GFLGTLAASDPSRA*PLRGPCPSRAA-LGLVAIRGLNAKPH 160
GFL AS PSR P R P+ AA L A RGL + PH
Sbjct: 33 GFLRRGPASSPSRLRPPRPDDPAPAASLSQGAARGLRSPPH 73
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 403 RSFA*ALETLRSGGCCTALGISIEAYLKMHWADRSEMLEFQDSQRLARDTVL 558
R +A AL+ SGG L ++++ L+MH +D +E + + Q+L D L
Sbjct: 126 RDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEK-QLRIMQQLDEDHTL 176
>01_01_0907 +
7128397-7128497,7129944-7130022,7130470-7130568,
7130654-7130767,7130960-7131102,7131716-7131797,
7132425-7132510,7132879-7133112,7134684-7135162,
7135309-7136027
Length = 711
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -1
Query: 352 PGAKFEGLQRAADDSGSGPC---AQPMRLPGDPCRVGPKPRMTTPR 224
PG +F G+Q + G+ P AQPM +PG P+PRM P+
Sbjct: 579 PGMQFPGMQ-PSPMPGAQPVMMYAQPMMMPGMQFAAMPQPRMYGPQ 623
>04_04_0293 -
24189344-24189350,24189804-24190026,24190411-24190529,
24191331-24191578
Length = 198
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 274 PGDPCRVGPKPRMTTPRTMSKQGSAGAGSDPRA 176
P P GP P+ T P +++ A AG P+A
Sbjct: 10 PKAPAAAGPAPKATAPAGPARKAPAAAGPAPKA 42
>02_05_0672 +
30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 247 WVRRGKGPQEAAWAARRGPTHCHRLLAA 330
W+ + Q + A R GP HC+ L +A
Sbjct: 715 WISKASASQRSGRAGRTGPGHCYHLYSA 742
>01_06_0050 +
25967604-25967685,25967780-25967891,25969238-25969361,
25969486-25969527,25969622-25969735,25969843-25969905,
25970741-25970868,25972198-25972279,25972372-25972423,
25972515-25972612,25972845-25973006,25973484-25973573,
25973700-25973777
Length = 408
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 580 SHSDSSRPPSQAAVAASPLQSTAGIGSRAGLVCCMHAW 693
S S + RP AA+A++ +++ A +G G+VC M ++
Sbjct: 3 SVSRALRPRPHAAIASAAVRTAARLGGGLGIVCSMPSY 40
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Frame = -1
Query: 649 PQYSGGEMPQLPPGKEGG------WSRNEIM-----GPLLDPKLYPVRVAASPETPTSRY 503
P G P PP + G W+R E+ GP + P YP RVA PE +
Sbjct: 69 PSDDPGSRPPPPPRRSQGPPQRQQWTREEMRFVKDAGPSITPVSYPARVAPLPEDRPAEE 128
Query: 502 DQPNAFLDK 476
P D+
Sbjct: 129 APPEGPADE 137
>01_06_0650 +
30872350-30872736,30873388-30873639,30873723-30873818,
30874005-30874173,30874452-30874552,30874910-30875002,
30876018-30876089,30876509-30876628,30876709-30876759,
30877621-30877809,30878099-30878266
Length = 565
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = -2
Query: 363 AKQDPELNSRVCSEQPMTVGRAPARSPCGFL----GTLAASDPSRA*PLRGPCPSRAALG 196
A + P+L + + PM PA +P L G +S+PSR+ P P P G
Sbjct: 12 ASRSPQLGAALIRSAPMRCPPLPAAAPTASLLSWRGFTPSSEPSRSAPPPPPLPMPPFAG 71
Query: 195 LVA 187
+A
Sbjct: 72 FLA 74
>10_06_0161 + 11344712-11344877,11345870-11346084
Length = 126
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +1
Query: 223 SSEWSCAAWVRRGK-GPQEAAWAA 291
S +W CA W+RR A WAA
Sbjct: 12 SGDWRCAGWLRRADWAASRAGWAA 35
>06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,
5588428-5588484,5588663-5588800,5588901-5588966,
5589234-5589452,5589522-5589737,5589813-5589884,
5589952-5590205,5590356-5590525,5590840-5591029,
5592211-5592331,5592838-5592921,5593003-5593365,
5594530-5594724,5594938-5595933,5596329-5596370
Length = 1240
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 394 RNKTTY--RVDYCETGPGAKFEGLQRAADDSGSG 299
RN Y R YC +GPGA E + ++S SG
Sbjct: 1096 RNSIAYSTRTSYCGSGPGASSESATTSVNNSYSG 1129
>03_01_0019 + 167900-168343,168567-168751,169076-169430
Length = 327
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/72 (26%), Positives = 25/72 (34%)
Frame = -1
Query: 334 GLQRAADDSGSGPCAQPMRLPGDPCRVGPKPRMTTPRTMSKQGSAGAGSDPRAKCETTSA 155
G+ A S S + P P P P + +P T S GS+G G T
Sbjct: 41 GISGNASSSSSNSSTPSIPPPVAPTPTAPTPPIPSPGTGSSNGSSGGGGGGWLNARATWY 100
Query: 154 VPPLGKSEYQDG 119
P G +G
Sbjct: 101 GAPNGAGPDDNG 112
>02_05_0204 -
26721498-26721545,26721731-26721823,26723822-26723931,
26724029-26724129,26724691-26724917
Length = 192
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -3
Query: 470 IEIPNAVQHPPERSVSRAQAKDRQRSKQDHLQGR 369
I +PNA HP +V RA R R HL GR
Sbjct: 8 IVVPNACSHPRNDAVPRA-GSSRSRRSSLHLAGR 40
>01_06_1368 - 36715630-36715698,36715835-36716284
Length = 172
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +1
Query: 574 PLSHSDSSRPPSQAAVAASPLQSTAGIG 657
P S S S+ S AAVAASPL G G
Sbjct: 29 PASASTSTSTSSSAAVAASPLAQAHGAG 56
>12_02_0990 + 25073910-25074734
Length = 274
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = -1
Query: 409 RIDRDRNKTTYRVDYC-ETGPGAKFEGLQRAADDSGSGPCAQPMRLPGDPCRVGPKPR 239
R+ + T +R D C E G GA+F D CA P+ P P R PR
Sbjct: 15 RLRLEHADTPFRCDGCREVGIGARFRCPFAGCDHDLHRQCALPLSPPPPPLRHPFYPR 72
>10_06_0016 - 9659580-9659771,9659906-9660011,9661567-9661853
Length = 194
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 574 PLSHSDSSRPPSQAAVAASPLQSTAGIGSRAG 669
P+ H + PP+ AVAA+ + AG+G+ G
Sbjct: 6 PVVHPVEAPPPAALAVAAAAVAVEAGVGAGGG 37
>10_01_0211 - 2268191-2268247,2268916-2268944,2270892-2271777
Length = 323
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 383 GLVSISVDPLLELWRRFVLEDAVQHWVFR 469
GLV++S D L ++W R V + V WV +
Sbjct: 197 GLVTLSYDSL-QIWERKVCSEGVTRWVLQ 224
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = -1
Query: 274 PGDPCRVGPKPRMTTPRTMSKQGSAGAGSDPRAKCETTSAVPP-LGKSEYQDGVSK 110
P P PKP T P G++G P +K A PP LG+ G +K
Sbjct: 764 PPPPPPQAPKPPGTVPPPPPLHGASGRPHPPSSKGLNAPAPPPLLGRGREATGSAK 819
>09_04_0708 +
19648511-19648808,19649189-19649280,19650850-19651000,
19651779-19651906,19652099-19652257,19652325-19652507,
19652978-19653178,19653269-19653289
Length = 410
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/74 (21%), Positives = 28/74 (37%)
Frame = +1
Query: 484 KMHWADRSEMLEFQDSQRLARDTVLDLGEDPLSHSDSSRPPSQAAVAASPLQSTAGIGSR 663
+M + E L+ L + + DL +S D R + + P+ + +
Sbjct: 126 RMEIKELMEKLKMPSDADLMKIAIADLNNSSISLEDRQRALQELLILVEPIDNANDLDKL 185
Query: 664 AGLVCCMHAW*NAN 705
GLV + NAN
Sbjct: 186 GGLVAVIQDLNNAN 199
>09_04_0574 +
18645363-18645870,18645995-18646491,18646631-18646696,
18646921-18646989,18647401-18647466
Length = 401
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 574 PLSHSDSSRPPSQAAVAASP 633
P + +SS+PPS A+ AASP
Sbjct: 281 PAASKNSSKPPSSASAAASP 300
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -3
Query: 581 DNGSSPRSKTVSRASRCES*NSNISLRSAQCIFR*ASIEIPNAVQHPPERSVSRAQAKDR 402
D GS PR + S A+R S ++S + + + + P RS+ R+ +DR
Sbjct: 25 DRGSPPRRRERSPAARSRSPRRRSPVKSTSSHRERSPVRRNGSPRRSPVRSIGRSPQRDR 84
Query: 401 QRSK 390
+ +
Sbjct: 85 VKEQ 88
>04_04_0406 +
24978845-24978970,24979073-24979142,24979541-24979556,
24979813-24979930,24980015-24980137,24980249-24980408,
24980470-24980546,24980635-24980687,24981263-24981317,
24981664-24981858
Length = 330
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +3
Query: 324 RCRPSNLAP---GPVSQ*STL*VVLFRSLSILCLSSGDA 431
RC P L P GP+++ T VVL R+ I+ ++GDA
Sbjct: 104 RCAPCVLGPVYCGPLAEGCTACVVLIRNTQIVVGNAGDA 142
>03_02_0517 + 9054816-9055655
Length = 279
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = -1
Query: 667 PPDCRCPQYSGG---EMPQLPPGKEGGWSRNEIMGPLL 563
P CP+ GG + PQ PP GG R M P++
Sbjct: 21 PSTVVCPECDGGFLEQFPQPPPRGGGGSGRRGAMNPVI 58
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 252 PTRQGSPGSRMGCAQGPDPLSSAARCRPSNLAPGPVSQ 365
PT +P SR+ A S+A PS+ AP P S+
Sbjct: 10 PTPASTPSSRLAAAPSSRVSSAAPHPSPSSSAPTPASR 47
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -1
Query: 667 PPDCRCPQYSGGEMPQL-PPGKEGGWSRNEIMGPLLDPKLYPVRVAASPETPTSRYD 500
PP CR P G P P ++ W N + P L P ++A P+ +R D
Sbjct: 145 PPPCRVPPPPGYRQPMAWPARRDRAWYANVEL-----PPLAPAKLAGPPDPVRARGD 196
>01_05_0638 - 23871424-23871974,23872154-23872325
Length = 240
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 240 RGLGPTRQGSPGSRMGCAQGPDPLSSAARCRPSNL 344
+G GP R+G P R G +GP + ++ R SN+
Sbjct: 202 KGDGPEREGGPPERGGMGRGP-RIEASRRSASSNM 235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,004,221
Number of Sequences: 37544
Number of extensions: 653485
Number of successful extensions: 2746
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2741
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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