Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16f19
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0738 - 20212220-20212282,20212387-20212593,20212690-202128... 33 0.19
02_05_0315 - 27822379-27823899 31 1.3
03_04_0069 - 17022468-17023361 30 1.8
09_04_0258 - 16175258-16176069,16176111-16176414 29 3.1
08_01_1065 - 10868890-10869999,10870925-10871004,10871224-108712... 29 5.4
06_03_0538 + 21913175-21914218 28 7.1
03_06_0110 - 31727376-31727381,31727554-31727664,31728071-317281... 28 7.1
10_05_0033 - 8415692-8415738,8416084-8416174,8416568-8416821,841... 28 9.4
08_02_0329 - 15833124-15833825 28 9.4
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 28 9.4
05_03_0622 - 16293341-16293350,16293783-16294063,16294343-162944... 28 9.4
04_04_1125 + 31085106-31085714 28 9.4
>10_08_0738 -
20212220-20212282,20212387-20212593,20212690-20212819,
20212919-20213089,20213311-20213433,20213517-20213618,
20214123-20214880
Length = 517
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 143 CMRCTRWRCGPWSPSPPTRGRSAQTL 66
C RC R RC +P+PP GRS ++L
Sbjct: 97 CRRCRRRRCSRLAPAPPHHGRSNRSL 122
>02_05_0315 - 27822379-27823899
Length = 506
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +1
Query: 370 PAARRRLYEGPVAYRGPGAV 429
PAA RRL+EGPVA GAV
Sbjct: 329 PAALRRLFEGPVALDSAGAV 348
>03_04_0069 - 17022468-17023361
Length = 297
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 274 GQRGVERG--DERVQRVREQHHERAHR-QQVGGPAPAARRRLYEGPVAYR 414
G+RGV RG R RVR A R + +G P A RRRL G V R
Sbjct: 248 GRRGVRRGRAGARGARVRRVGGRAARRVRHLGAPPCAPRRRLRRGGVRRR 297
>09_04_0258 - 16175258-16176069,16176111-16176414
Length = 371
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 280 RGVERGDERVQRVREQHHERAHRQQVGGPAPAARRRLYEG-PVAYRGPGA 426
+G +GD+ ++RE+ ++ R+ P + RR+ +G +A R GA
Sbjct: 288 QGFRQGDQEAAQLREEEQQQERRRPAAFPGASGRRKARDGHGMARRRGGA 337
>08_01_1065 -
10868890-10869999,10870925-10871004,10871224-10871283,
10871490-10871678,10871931-10872092,10872989-10873100
Length = 570
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = +1
Query: 340 AHRQQV-GGPAP-AARRRLYEGPVAYRGP 420
A RQ++ GG P A ++RLY GP +Y+GP
Sbjct: 330 AMRQRLSGGVQPDAPQQRLYMGPFSYQGP 358
>06_03_0538 + 21913175-21914218
Length = 347
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 170 PRCTRCTSPCMRCTRWRCGPWSPSPP 93
PR + S R+ CG WSP PP
Sbjct: 221 PRRSSSVSRLASLERFECGSWSPPPP 246
>03_06_0110 -
31727376-31727381,31727554-31727664,31728071-31728133,
31729202-31729331,31729532-31729701,31729800-31729859,
31729941-31730018,31730108-31730197,31730275-31731118,
31731220-31731281,31731362-31731423,31731511-31731700
Length = 621
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -3
Query: 441 TDLVHSTGAAIGNGALIQAAAGSGR 367
TD+V S A GNGA I AAAG R
Sbjct: 583 TDVVGSGVPAAGNGAEITAAAGDAR 607
>10_05_0033 -
8415692-8415738,8416084-8416174,8416568-8416821,
8417473-8417482
Length = 133
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 415 GPGAVYKVGGARAAAGPQQTQRV 483
GP +++VG ARA AGP R+
Sbjct: 7 GPRKIWRVGAARAVAGPAAQPRL 29
>08_02_0329 - 15833124-15833825
Length = 233
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 116 GPWSPSPPTRGRSAQTLSPTARVR 45
GP P+PP R R A +PT R R
Sbjct: 201 GPPPPTPPARRRRASPPAPTQRTR 224
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 340 AHRQQVGGPAPAARRRLYEGPVAYRGPGAVYKVGGARAAAGPQQTQRV 483
AH+Q G P RR+ +R P A+ + A PQQ R+
Sbjct: 742 AHKQVDGTPEARQLRRIEFSSSKFRSPPALARFNSRNNALSPQQKLRL 789
>05_03_0622 -
16293341-16293350,16293783-16294063,16294343-16294474,
16294561-16294741,16295054-16295096,16295183-16295249,
16296708-16296834,16296985-16297620,16298253-16298761,
16298842-16299157,16299615-16300053,16300128-16300353,
16300441-16300625,16300839-16300950,16301459-16301495,
16301977-16302011,16302497-16302810,16303463-16303475
Length = 1220
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -1
Query: 170 PRCTRCTSPCMRCTRWRCGPWSPSPPTRGRSA--QTLSPTAR-VRACEISXMGSI 15
P R P R RW P SPS P R+A +S TAR + AC +GS+
Sbjct: 43 PSLARPQEPARR--RWSRRPTSPSAPNLLRAAPLSLVSATARSLLACRREGIGSV 95
>04_04_1125 + 31085106-31085714
Length = 202
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -1
Query: 191 PAWPCSPPRCTRC-TSPCMRCTRWRCGPWSPSPPT 90
P PC PP T +P T W P +P+PPT
Sbjct: 40 PPPPCQPPPPTPTPATPTTPPTPWTPPPATPTPPT 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,869,033
Number of Sequences: 37544
Number of extensions: 300785
Number of successful extensions: 1362
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -