Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f19
         (767 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124214-1|BAC85808.1|  167|Homo sapiens protein ( Homo sapiens ...    36   0.16 
M20030-1|AAA36639.1|   72|Homo sapiens protein ( Human small pro...    34   0.64 
AL139417-1|CAI21953.1|   72|Homo sapiens small proline-rich prot...    32   2.6  
AF333955-1|AAK70942.1|   72|Homo sapiens small proline-rich prot...    32   2.6  
X90761-1|CAA62284.1|  448|Homo sapiens HHa2 hair keratin type I ...    31   6.0  
X81419-1|CAA57179.1|  405|Homo sapiens hair type I acidic kerati...    31   6.0  

>AK124214-1|BAC85808.1|  167|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42220 fis, clone THYMU2038615. ).
          Length = 167

 Score = 35.9 bits (79), Expect = 0.16
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +1

Query: 280 RGVERGDERVQRVREQHHERAHRQQVGGPAPAARRRLYEG 399
           RG ERG ERVQR  E   +    + +  P+P A R++ EG
Sbjct: 128 RGAERGKERVQRAGESFRKSGRGRYLPVPSPRATRQIGEG 167


>M20030-1|AAA36639.1|   72|Homo sapiens protein ( Human small
           proline rich protein (sprII) mRNA, clone 930. ).
          Length = 72

 Score = 33.9 bits (74), Expect = 0.64
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -1

Query: 182 PCSPPRCTRCTSPCMRCTRWRCGPWSPSPP 93
           PC PP+C +  SP  +C + +C P +PSPP
Sbjct: 35  PCPPPKCPQ-PSPPQQCQQ-KCPPVTPSPP 62


>AL139417-1|CAI21953.1|   72|Homo sapiens small proline-rich protein
           2E protein.
          Length = 72

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 8/38 (21%)
 Frame = -1

Query: 182 PCSPPRC------TRCTSPC--MRCTRWRCGPWSPSPP 93
           PC PP+C       +C  PC   +C + +C P +PSPP
Sbjct: 26  PCPPPKCPEPCPPPKCPQPCPPQQCQQ-KCPPVTPSPP 62


>AF333955-1|AAK70942.1|   72|Homo sapiens small proline-rich protein
           2E protein.
          Length = 72

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 8/38 (21%)
 Frame = -1

Query: 182 PCSPPRC------TRCTSPC--MRCTRWRCGPWSPSPP 93
           PC PP+C       +C  PC   +C + +C P +PSPP
Sbjct: 26  PCPPPKCPEPCPPPKCPQPCPPQQCQQ-KCPPVTPSPP 62


>X90761-1|CAA62284.1|  448|Homo sapiens HHa2 hair keratin type I
           intermediate filament protein.
          Length = 448

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 191 PAWPCSPPRCTRCT-SPCMRCTRWRCGPWSPSPP 93
           P  PCS P CT C  SPC+  TR  C P +   P
Sbjct: 408 PCNPCSTPSCTTCVPSPCV--TRTVCVPRTVGMP 439


>X81419-1|CAA57179.1|  405|Homo sapiens hair type I acidic keratin
           protein.
          Length = 405

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 191 PAWPCSPPRCTRCT-SPCMRCTRWRCGPWSPSPP 93
           P  PCS P CT C  SPC+  TR  C P +   P
Sbjct: 365 PCNPCSTPSCTTCVPSPCV--TRTVCVPRTVGMP 396


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,611,066
Number of Sequences: 237096
Number of extensions: 1549434
Number of successful extensions: 6386
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6340
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)