Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f19
         (767 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM294190-1|CAL26094.1|   56|Drosophila melanogaster CG17956 prot...    33   0.57 
AF273708-1|AAL35411.1|  118|Drosophila melanogaster PFTAIRE-inte...    32   0.99 
AE014297-475|AAF54113.3|  118|Drosophila melanogaster CG31483-PA...    32   0.99 
X67703-4|CAA47940.1|   68|Drosophila melanogaster Mst84Dd protein.     31   2.3  
BT029401-1|ABK57058.1|   96|Drosophila melanogaster IP02163p pro...    31   2.3  
BT023344-1|AAY55760.1|   72|Drosophila melanogaster IP02161p pro...    31   2.3  
AE014297-604|AAF54026.1|   72|Drosophila melanogaster CG17935-PA...    31   2.3  

>AM294190-1|CAL26094.1|   56|Drosophila melanogaster CG17956
           protein.
          Length = 56

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -1

Query: 191 PAWPCSPPRCTRCTSPCMRCTRWRCGPW 108
           P  PC  P C  C  PC  C    CGPW
Sbjct: 5   PCGPCCGPCCGPCCGPCGPC-GGGCGPW 31


>AF273708-1|AAL35411.1|  118|Drosophila melanogaster
           PFTAIRE-interacting factor 2 protein.
          Length = 118

 Score = 31.9 bits (69), Expect = 0.99
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 182 PCSPPRCTRCTSPCMRCTRWRCGP 111
           PC  P CT C +PC +C    C P
Sbjct: 56  PCCTPCCTPCCTPCCKCCTPCCVP 79



 Score = 29.9 bits (64), Expect = 4.0
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -1

Query: 182 PCSPPRCTRCTSPCMR-CTRWRCGP 111
           PC  P CT C +PC   C    CGP
Sbjct: 79  PCCTPCCTPCCTPCCTPCCSPCCGP 103


>AE014297-475|AAF54113.3|  118|Drosophila melanogaster CG31483-PA
           protein.
          Length = 118

 Score = 31.9 bits (69), Expect = 0.99
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 182 PCSPPRCTRCTSPCMRCTRWRCGP 111
           PC  P CT C +PC +C    C P
Sbjct: 56  PCCTPCCTPCCTPCCKCCTPCCVP 79



 Score = 29.9 bits (64), Expect = 4.0
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -1

Query: 182 PCSPPRCTRCTSPCMR-CTRWRCGP 111
           PC  P CT C +PC   C    CGP
Sbjct: 79  PCCTPCCTPCCTPCCTPCCSPCCGP 103


>X67703-4|CAA47940.1|   68|Drosophila melanogaster Mst84Dd protein.
          Length = 68

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
 Frame = -1

Query: 182 PCSPPRCTRCTSPCMRCTRW---RCGPWSPSPPTRG 84
           PC  P C  C  PC  C      RCGP  P  P  G
Sbjct: 19  PCCGPCCGPCCGPCGPCCGPCGPRCGPCGPCGPCCG 54



 Score = 29.1 bits (62), Expect = 7.0
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -1

Query: 191 PAWPCSPPRCTRCTSPCMRCTRWRCGPWSP 102
           P  PC  P C  C  PC       CGP  P
Sbjct: 12  PCGPCCGPCCGPCCGPCCGPCGPCCGPCGP 41


>BT029401-1|ABK57058.1|   96|Drosophila melanogaster IP02163p
           protein.
          Length = 96

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
 Frame = -1

Query: 182 PCSPPRCTRCTSPCMRC---TRWRCGPWSPSPPTRG 84
           PC  P C  C  PC  C      RCGP  P  P  G
Sbjct: 47  PCCGPCCGPCCGPCGPCCGPCGPRCGPCGPCGPCCG 82


>BT023344-1|AAY55760.1|   72|Drosophila melanogaster IP02161p
           protein.
          Length = 72

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
 Frame = -1

Query: 182 PCSPPRCTRCTSPCMRC---TRWRCGPWSPSPPTRG 84
           PC  P C  C  PC  C      RCGP  P  P  G
Sbjct: 23  PCCGPCCGPCCGPCGPCCGPCGPRCGPCGPCGPCCG 58


>AE014297-604|AAF54026.1|   72|Drosophila melanogaster CG17935-PA
           protein.
          Length = 72

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
 Frame = -1

Query: 182 PCSPPRCTRCTSPCMRC---TRWRCGPWSPSPPTRG 84
           PC  P C  C  PC  C      RCGP  P  P  G
Sbjct: 23  PCCGPCCGPCCGPCGPCCGPCGPRCGPCGPCGPCCG 58


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,742,899
Number of Sequences: 53049
Number of extensions: 463796
Number of successful extensions: 2099
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2050
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3540671772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)