Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f19
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen pro...    29   3.6  
AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen pro...    29   3.6  
AC006772-3|AAF60608.1|   85|Caenorhabditis elegans Hypothetical ...    29   4.8  
AC024765-1|AAF60529.2|  300|Caenorhabditis elegans Prion-like-(q...    28   6.4  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    28   8.4  
Z36719-3|CAA85314.1|  135|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n...    28   8.4  

>AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen
           protein 143 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 476 CVCCGPAAARAPPTLYTAPGPR*ATGPSYKRRRAAGAGPP 357
           C+ C PA A  P     APGP+   G      ++ G GPP
Sbjct: 131 CITC-PAGAPGPAGPPGAPGPKGNNGQPGAPAQSGGRGPP 169


>AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen
           protein 142 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 476 CVCCGPAAARAPPTLYTAPGPR*ATGPSYKRRRAAGAGPP 357
           C+ C PA A  P     APGP+   G      ++ G GPP
Sbjct: 131 CITC-PAGAPGPAGPPGAPGPKGNNGQPGAPAQSGGRGPP 169


>AC006772-3|AAF60608.1|   85|Caenorhabditis elegans Hypothetical
           protein Y46D2A.3 protein.
          Length = 85

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 479 RCVCCGPAAARAPPTLYTAPGPR*ATGPSYKRR 381
           RC C GP   +AP      P PR    P Y ++
Sbjct: 42  RCKCSGPTKRKAPCANRPCPFPRTTCCPGYNKK 74


>AC024765-1|AAF60529.2|  300|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 82
           protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 259 RVPESGQRGVERGDERVQRVREQHH-ERAHRQQVGGPAPAARR 384
           R P+  Q G       V ++++ HH ++  RQQ+  P P+ RR
Sbjct: 106 RPPQQTQNGAPMLRLPVHQIQQAHHLQQQQRQQMQQPMPSRRR 148


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 161  TRCTSPCMRCTRWRCGPWSPSPPTRGRSAQTLS 63
            T  T   + CT W+   WSP   T G   QT S
Sbjct: 1287 TSQTCHLLPCTSWKPSHWSPCSVTCGSGIQTRS 1319


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 161  TRCTSPCMRCTRWRCGPWSPSPPTRGRSAQTLS 63
            T  T   + CT W+   WSP   T G   QT S
Sbjct: 1287 TSQTCHLLPCTSWKPSHWSPCSVTCGSGIQTRS 1319


>Z36719-3|CAA85314.1|  135|Caenorhabditis elegans Hypothetical
           protein C06C3.7 protein.
          Length = 135

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 259 RVPESGQRGVE--RGDERVQRVREQHHERAHRQQV 357
           R P+   R +E  R + R++R +E H++ A +QQ+
Sbjct: 77  RTPDEEARKIEKLRREARIKRSKEVHYDAAEQQQI 111


>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
            isoform a protein.
          Length = 1702

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 277  QRGVERGDERVQRVREQHHERAHRQQVGGPAPAARRR 387
            Q  ++  +++  RV+ QHH   H Q+  GP  AA R+
Sbjct: 1085 QNQIQVTNQQTHRVQYQHHPVQHNQR-NGPTKAAPRK 1120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,869,775
Number of Sequences: 27780
Number of extensions: 208969
Number of successful extensions: 863
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)