Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16f18
(554 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 28 0.80
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 28 1.1
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 26 3.2
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 26 4.3
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 5.7
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 5.7
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 25 7.5
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||... 25 7.5
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 25 7.5
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 25 7.5
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 9.9
SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosacch... 25 9.9
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 25 9.9
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 28.3 bits (60), Expect = 0.80
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 360 EKISRYLTINISRADPLPKTICKNCLERLEKQHKLVMVMENAANM-LKGRKTRAAKSETK 184
EK YL+I R K +C+ CL++ + ++ E+A N+ +K RK + K
Sbjct: 361 EKARDYLSIMNGRQSQKKKFVCEECLDK--RGDPFTVIGEDAFNVHIKSRKHKTTVRRKK 418
Query: 183 Q 181
+
Sbjct: 419 E 419
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 235 CVFHHHYQFVLFFKSFQTIFANGFWEWVGSRN 330
C FHH Y ++L QTI W W SRN
Sbjct: 101 CTFHHEYPWILSCSDDQTI---RIWNW-QSRN 128
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 156 NLIHAVSNNS*GLSLGICFKDY 91
N + A SN+S SLGI F DY
Sbjct: 565 NFLRAFSNSSFAQSLGIVFDDY 586
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 25.8 bits (54), Expect = 4.3
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -3
Query: 417 MHRIVIHIYGEEGIRLCISEKISRYLTINISRADPLPKTICKNCLERLEKQHKLV 253
MH +I G + C+S S ++ + +R+D L + ++CLER+ Q L+
Sbjct: 581 MHSFMIKPGGIVNYQACVSNYRS-FINVT-ARSDVLVGFLPRSCLERIIDQEPLI 633
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 5.7
Identities = 18/70 (25%), Positives = 29/70 (41%)
Frame = -3
Query: 552 KIFTYILGNVLKKIVVLLNFN*FLTIMGSLDRAILTGFICRLCSEMHRIVIHIYGEEGIR 373
KI +IL N+ KI +FN +T ++ TGF R + + I G +
Sbjct: 1181 KILNFILYNIESKIQTHASFNVTITEHNHVESKARTGFSKREEKLVRSCLSKILGNTVLS 1240
Query: 372 LCISEKISRY 343
+ E + Y
Sbjct: 1241 ADVFENLQNY 1250
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.4 bits (53), Expect = 5.7
Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +2
Query: 224 NMLAAFSITITSLCC--FSSLSKQFLQMVFGSGSAREMFMVRYRLIFSEIHSRMPSSPYI 397
N+ A+++ I ++C S + ++ V G GS ++++ + L +++ +
Sbjct: 8 NISASYNDLIATICNPRISDVGTYRIESVVGEGSFGKVYLAAHLLTNTKVVLKSSCRKQA 67
Query: 398 CITMRCISEHSRHMNP 445
I R I H R ++P
Sbjct: 68 IILAREIHHHRRLLHP 83
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 7.5
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +3
Query: 177 ITALFHFWQPLFYALLTCWL 236
+TALF+FW+ ++ + + WL
Sbjct: 1 MTALFNFWRIMYANISSIWL 20
>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 252
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 347 RLIFSEIHSRMPSSPYICITMRCISEHSRHMNPVRIA 457
R ++ I ++M I + +C S HSR P+R A
Sbjct: 199 RPVYVSIGNQMNLEQSIQLVQKCSSSHSRVPEPIRQA 235
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 95 SLKHIPNDNPYELLDTACIKLQFQLSINYCFVSLL 199
SL +P Y L + C KLQFQ+S+ C + ++
Sbjct: 99 SLPCLPRSEIYRLAN--CNKLQFQISLLRCCLRIV 131
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 25.0 bits (52), Expect = 7.5
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +1
Query: 166 IINKLLLCFTFGSPCFTPF*HVGCVFHHHYQFVLFFKSFQTIFANGFWE 312
+ NK F+F SPC T F HY F+ S + + F E
Sbjct: 282 LFNKPFFDFSFYSPCLTKFPATIDYISLHYDFLGQISSHLSSYKEKFEE 330
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 253 YQFVLFFKSFQTIFANGFWEWV 318
Y +V FFK T F+ +W W+
Sbjct: 211 YCYVRFFKLRHTPFSRPWWAWL 232
>SPAC222.03c |tim10||Tim9-Tim10 complex subunit
Tim10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = -2
Query: 382 RHTTMYFRKNQSISHH--KHFSSRPTP 308
R + YF NQS+S H K PTP
Sbjct: 63 RCVSKYFEANQSLSQHMQKRGQENPTP 89
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/57 (22%), Positives = 28/57 (49%)
Frame = -3
Query: 438 ICRLCSEMHRIVIHIYGEEGIRLCISEKISRYLTINISRADPLPKTICKNCLERLEK 268
I R C + HR+ HI E + ++ + L ++ + L T+C++ E +++
Sbjct: 17 ILRQCEDFHRLSTHIERFEREQASLNMHVKTELEKHVEAVEML--TLCESAREMVDE 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,027
Number of Sequences: 5004
Number of extensions: 51935
Number of successful extensions: 112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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