Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f18
         (554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75529-5|CAA99784.1|  610|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AC024882-1|AAF60940.1|  369|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z78414-3|CAD60425.1|  309|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z92830-1|CAB07354.1|  342|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z81084-5|CAI79227.1|  447|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z81084-4|CAB03109.2|  476|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like p...    27   6.9  
AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like ...    27   6.9  
AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like ...    27   6.9  
Z92829-9|CAB07349.1|  360|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z81142-10|CAB03503.2|  384|Caenorhabditis elegans Hypothetical p...    27   9.1  
Z72506-6|CAA96615.1|  182|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z75529-5|CAA99784.1|  610|Caenorhabditis elegans Hypothetical
           protein C44H9.6 protein.
          Length = 610

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +3

Query: 228 CWLRFPSPLPVCVVFQVFPNNFCKWFLGVGRLEKCLW*DID*FFLKYIVVCLLHHIYVSQ 407
           C  R     P C+   + P ++  WF+ + + EK +       F+ YIV  L  H+++  
Sbjct: 354 CMNRSSQVAPECIQSSIPPVDYFNWFINIIQWEKNII-----GFIFYIVKWLFKHLFLLG 408

Query: 408 CGAFQNIVDI 437
            GA    V +
Sbjct: 409 LGALLTYVPL 418


>AC024882-1|AAF60940.1|  369|Caenorhabditis elegans Hypothetical
           protein Y9C9A.17 protein.
          Length = 369

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 386 SPYICITMRCISEHSRHMNPVRIALSRLPII 478
           SP + I M C+S     M P+ +AL  +PI+
Sbjct: 288 SPSLRINMECLSRPMTIMTPIYLALDPIPIL 318


>Z78414-3|CAD60425.1|  309|Caenorhabditis elegans Hypothetical
           protein W09D12.3 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
 Frame = +2

Query: 155 LQFQLSINY-CFVSLLAALVLRPFNMLAAFSITI-TSLCCFSSLSKQFLQMVFGSGSARE 328
           +Q  + +N  C+++   A+ L  F +   F I + +SL    +LSK F+ + F   +   
Sbjct: 41  VQIDIFVNITCYINSWLAIRLEYFEIGRTFLIFLESSLPGCLTLSKLFVSLYFHLQNVTG 100

Query: 329 MFMVRYRLIFSEIHS 373
           +F+V YR  F+ ++S
Sbjct: 101 LFLVIYR--FTSVYS 113


>Z92830-1|CAB07354.1|  342|Caenorhabditis elegans Hypothetical
           protein F11A5.1 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 245 ITITSLCCFSSLSKQFLQMVFGSGSAREMFMVRYRLIFSEIHS--RMPSSPYICI 403
           I  TSLC F S  KQ L +V  + S   +F  RY L+F+E H+  R    P++ I
Sbjct: 98  ILSTSLCMFHSTLKQNLIIVL-AVSIITIFENRYFLLFAE-HTWWRFARRPFLAI 150


>Z81084-5|CAI79227.1|  447|Caenorhabditis elegans Hypothetical
           protein F46A9.3b protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 375 RLCISEKISRYLTINISRADPLPKTICKNCLERLEKQHKLVMVMENAA 232
           RLCI   ++R   + ++RA  +   I + CL    K  ++    ++AA
Sbjct: 61  RLCIESLLNRDNRLRLTRASDVAAAIAERCLTENVKDDRMQWSFKSAA 108


>Z81084-4|CAB03109.2|  476|Caenorhabditis elegans Hypothetical
           protein F46A9.3a protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 375 RLCISEKISRYLTINISRADPLPKTICKNCLERLEKQHKLVMVMENAA 232
           RLCI   ++R   + ++RA  +   I + CL    K  ++    ++AA
Sbjct: 90  RLCIESLLNRDNRLRLTRASDVAAAIAERCLTENVKDDRMQWSFKSAA 137


>U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like
           protein protein 18 protein.
          Length = 932

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 290 FLQMVFGSGSAREMFMVRYRLIFSEIHSRMPSSPYICITMR 412
           F  + +  GS  E  +  ++ I SE  +   SSP+ CI ++
Sbjct: 404 FALLKYTIGSENEQIVNEFKKIISEFSAANSSSPFECIALK 444


>AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like
           protein-18 protein.
          Length = 932

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 290 FLQMVFGSGSAREMFMVRYRLIFSEIHSRMPSSPYICITMR 412
           F  + +  GS  E  +  ++ I SE  +   SSP+ CI ++
Sbjct: 404 FALLKYTIGSENEQIVNEFKKIISEFSAANSSSPFECIALK 444


>AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like
           protein KLP-18 protein.
          Length = 930

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 290 FLQMVFGSGSAREMFMVRYRLIFSEIHSRMPSSPYICITMR 412
           F  + +  GS  E  +  ++ I SE  +   SSP+ CI ++
Sbjct: 402 FALLKYTIGSENEQIVNEFKKIISEFSAANSSSPFECIALK 442


>Z92829-9|CAB07349.1|  360|Caenorhabditis elegans Hypothetical
           protein F10A3.13 protein.
          Length = 360

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = +2

Query: 200 AALVLRPFNMLAAFSITITSLCCFSSLSKQFLQMVFGSGSAREMFMVRYRLIFSEIHSRM 379
           A L++  F+M   F   + ++CC  S  K+ L   FG    +  F   +R +     S++
Sbjct: 287 ANLLMISFSMYPCFE-PLVAVCCIKSFRKRILGGFFGKNQHKWSFSGIFRCLTVRKSSQI 345

Query: 380 PSSPYICIT 406
            +   + +T
Sbjct: 346 SNLSTVVVT 354


>Z81142-10|CAB03503.2|  384|Caenorhabditis elegans Hypothetical
           protein ZK1037.4 protein.
          Length = 384

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 253 YQFVLFFKSFQTIFANGFW 309
           Y +   + + +TIFANGFW
Sbjct: 328 YNYSFIYGASRTIFANGFW 346


>Z72506-6|CAA96615.1|  182|Caenorhabditis elegans Hypothetical
           protein F07A5.5 protein.
          Length = 182

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 366 ISEKISRYLTINISRADPLPK 304
           I EK S+ LTIN+ + D LPK
Sbjct: 29  IIEKDSKRLTINLKKVDALPK 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,977,988
Number of Sequences: 27780
Number of extensions: 284424
Number of successful extensions: 773
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)