Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16f16
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 360 e-100
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 197 2e-51
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 193 2e-50
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 133 2e-32
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 28 1.8
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 26 5.4
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 26 7.1
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 25 9.4
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 9.4
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 25 9.4
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 25 9.4
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 360 bits (885), Expect = e-100
Identities = 162/239 (67%), Positives = 200/239 (83%)
Frame = -2
Query: 765 YCIDNEALYYICHRTLKLMTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMIP 586
+CIDNEAL I TLK+ +P+Y DLNHLVS M+GVTT RFPG+LN+DLRKLAVNM+P
Sbjct: 200 FCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVP 259
Query: 585 FPRLHFFMPGFAPLTSRNSQQYRALTVPELTQQMFDAKNMMAACDPHRGRYLTVATVFRG 406
FPRLHFFM GFAPL + S ++A++VPELTQQMFDA NMM A DP GRYLTVA +FRG
Sbjct: 260 FPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRG 319
Query: 405 RMSMKEIDEQILNVQKKNKDFFVEWIPNNVQTAVCDIPPRGMKMSATFIGNTTAIQEIFK 226
++SMKE+DEQI +VQ KN +FVEWIP+NV AVC +PP+ +KMSATFIGN+T+IQEIF+
Sbjct: 320 KVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFR 379
Query: 225 RISEQFAAMFSRKAFLHWYTGEGMEEGDFAEADNNVSDLLSEYQQYQDATIDQEFEDEE 49
R+ +QF+AMF RKAFLHWYTGEGM+E +F EA++N++DL+SEYQQYQ+A ID+ ED E
Sbjct: 380 RLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGIDEGDEDYE 438
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 197 bits (480), Expect = 2e-51
Identities = 85/247 (34%), Positives = 147/247 (59%), Gaps = 8/247 (3%)
Frame = -2
Query: 765 YCIDNEALYYICHRTLKLMTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMIP 586
+ +DNE+ Y IC R L + P+Y +LN L++ +S +T LRF G LN DL + N++P
Sbjct: 202 FMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVP 261
Query: 585 FPRLHFFMPGFAPLTSRNSQQYRALTVPELTQQMFDAKNMMAACDPHRGRYLTVATVFRG 406
+PR+HF + +AP+ S + + +V E+T Q F+ N M CDP GRY+ ++RG
Sbjct: 262 YPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRG 321
Query: 405 RMSMKEIDEQILNVQKKNKDFFVEWIPNNVQTAVCDIPPRGMKMS--------ATFIGNT 250
+ +++ + ++ K FV+W P + +CD PP+ ++ S + NT
Sbjct: 322 DVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNT 381
Query: 249 TAIQEIFKRISEQFAAMFSRKAFLHWYTGEGMEEGDFAEADNNVSDLLSEYQQYQDATID 70
T+I E + R+ +F M+S++AF+HWY GEGMEEG+F+EA +++ L +Y++ +++
Sbjct: 382 TSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSME 441
Query: 69 QEFEDEE 49
++ +EE
Sbjct: 442 VDYMEEE 448
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 193 bits (471), Expect = 2e-50
Identities = 85/248 (34%), Positives = 147/248 (59%), Gaps = 9/248 (3%)
Frame = -2
Query: 765 YCIDNEALYYICHRTLKLMTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMIP 586
+ +DNEA Y IC R L + PTY +LN L++ +S +T LRF G LN DL + N++P
Sbjct: 206 FMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVP 265
Query: 585 FPRLHFFMPGFAPLTSRNSQQYRALTVPELTQQMFDAKNMMAACDPHRGRYLTVATVFRG 406
+PR+HF + ++P+ S + + +V E+T Q F+ N M CDP GRY+ ++RG
Sbjct: 266 YPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRG 325
Query: 405 RMSMKEIDEQILNVQKKNKDFFVEWIPNNVQTAVCDIPPR--------GMKMSATFIGNT 250
+ +++ + +++ + FV+W P + +C PP+ + + + NT
Sbjct: 326 DVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNT 385
Query: 249 TAIQEIFKRISEQFAAMFSRKAFLHWYTGEGMEEGDFAEADNNVSDLLSEYQQY-QDATI 73
T+I E + R+ +F M+S++AF+HWY GEGMEEG+F+EA +++ L +Y++ QD+
Sbjct: 386 TSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMD 445
Query: 72 DQEFEDEE 49
++ +E +E
Sbjct: 446 NEMYEADE 453
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 133 bits (322), Expect = 2e-32
Identities = 71/240 (29%), Positives = 130/240 (54%), Gaps = 10/240 (4%)
Frame = -2
Query: 771 SLYCIDNEALYYICHRTLKLMTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNM 592
S+ +DN AL +I L PT+ N LVS MS TT LR+PG +N DL + ++
Sbjct: 201 SVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASL 260
Query: 591 IPFPRLHFFMPGFAPLTSRNSQQYRAL---TVPELTQQMFDAKNMMAACDP-HRGRYLTV 424
IP PR HF + + P T++ ++ +A+ TV ++ +++ KN M + +P + ++++
Sbjct: 261 IPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISI 320
Query: 423 ATVFRGRMSMKEIDEQILNVQKKNKDFFVEWIPNNVQTAVCDIPP---RGMKMSATFIGN 253
+ +G ++ + +L ++++ F+ W P ++Q A+ P ++S + N
Sbjct: 321 LDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLAN 380
Query: 252 TTAIQEIFKRISEQFAAMFSRKAFLHWYTGEGMEEGDFAEADNN---VSDLLSEYQQYQD 82
T+I +FKR +Q+ + R AFL Y E + E D E D++ V+DL++EY+ +D
Sbjct: 381 HTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYEACED 440
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 27.9 bits (59), Expect = 1.8
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -1
Query: 622 RGSTKVSGQYDTLSEAALLYARLCTADVKK*SAVPRSHGTRINTTNVRRKEYDGGL*SSP 443
+GST V DTLS +A L+ + V + S R HGT N+ N + +D +
Sbjct: 9 KGSTNVGSSTDTLSTSASLHPSMNAGSVNEYSEQQR-HGT--NSFNGKPSVHDSVGSDAS 65
Query: 442 RSLSHCSH 419
S H +H
Sbjct: 66 VSNGHNNH 73
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 99 YQQYQDATIDQEFEDEEXSRRAKRR 25
+Q +Q+ D+++E+EE +AKRR
Sbjct: 48 HQAFQEDEGDEDWEEEEHKPKAKRR 72
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 388 FLH*HSSPEDGGYSEIATAVRI 453
F + H S EDG YSE A+ +
Sbjct: 3 FFNAHKSAEDGNYSETTNAISL 24
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 162 EGMEEGDFAEADNNVSDLLSEYQQYQDATIDQEFEDE 52
E + + +A + + D+L +Y + T Q+FEDE
Sbjct: 121 ESLSSTTYEDAPSQL-DILDNVVEYMNKTASQDFEDE 156
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 530 LFLDVSGAKPGIKKCSLGKGIILTANFRRSALSC 631
L+ D + K G+K +L KG + RSA +C
Sbjct: 178 LYYDSATVKKGLKSGTLFKGTLRILENHRSAFAC 211
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -2
Query: 555 FAPLTSRNSQQYRALTVPE--LTQQMFDAKNMM 463
FAP TSR S Y +T+ + LT + D N++
Sbjct: 276 FAPSTSRTSCYYTLITLNQTVLTHKQVDVANLL 308
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -2
Query: 402 MSMKEIDEQILNVQKKNKDFFVEWIPNNVQTAVCDIPPRGMKMSATFIGNTTAIQEIFKR 223
M++ ++D +Q N+D E PNN TA+ P+ + +GN + I R
Sbjct: 55 MNVHQLDTAGEPLQSMNED---EVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASR 111
Query: 222 ISE-QFAAMFSR 190
+ E + +FS+
Sbjct: 112 MQEDELQQIFSK 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,207,283
Number of Sequences: 5004
Number of extensions: 67346
Number of successful extensions: 217
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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