Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f16
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   3.2  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   5.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.5  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 544 QRCKAGHKEVQPRKGYHIDR*LS*IRVKLPWKPQTRCH 657
           Q  +  H E++  +  H+   L  ++V +P  P+T  H
Sbjct: 47  QGSRTTHNELEKNRRAHLRNCLEKLKVLVPLGPETSRH 84


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 619 GSTKVSGQYDTLSEAALLYARLCTADVKK*SAVPR 515
           GST ++   DT+S    + AR    D +   AVP+
Sbjct: 97  GSTPLTFVNDTVSFTTTVSARFWLMDCRNIGAVPK 131


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 561 PGFAPLTSRNSQQYRALTVPELTQQ 487
           PG  P   + +QQ++ +    L+QQ
Sbjct: 219 PGMHPRQQQQAQQHQGVVTSPLSQQ 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,550
Number of Sequences: 438
Number of extensions: 4725
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)