Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16f15
(313 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0787 + 11180794-11180958,11181051-11181230,11181396-111816... 28 1.3
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242 28 1.3
02_01_0039 - 271926-273503 28 1.8
01_01_1161 + 9244628-9245748,9247696-9247828,9248233-9248448,924... 27 3.1
01_06_1615 - 38652493-38652668,38652896-38653043,38653125-386533... 26 5.4
01_06_0716 - 31425189-31426460 26 7.2
01_05_0658 - 24043655-24043945,24044003-24044257,24044359-240445... 26 7.2
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288... 25 9.5
07_03_0396 + 17672009-17672339,17672408-17673087 25 9.5
>03_02_0787 +
11180794-11180958,11181051-11181230,11181396-11181611,
11181693-11181875,11182013-11182234,11182434-11182550,
11182682-11182825,11183198-11183299,11183762-11183830,
11184283-11184516
Length = 543
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 231 NRVMRSFEGKQWPYFRQFYFKQILK 305
N V+ F+ W Y YFKQI+K
Sbjct: 340 NNVLTDFDRDMWTYISLGYFKQIVK 364
>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
Length = 417
Score = 28.3 bits (60), Expect = 1.3
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Frame = -1
Query: 268 GH--CLPSNDLITRFECLPN---FPTGIFRCTTGETLGSGADKGCCYQ---CPEYFAYQH 113
GH C P D + P+ F T RC E + + + C Y CP+ AY +
Sbjct: 56 GHLVCSPCRDNLPAGGKCPSPSCFGTPSVRCVAMERVVNSVEVACAYAEHGCPDKIAYAN 115
Query: 112 MTFYDLHLYLRPCRKPSAKTG 50
+T ++ PC P G
Sbjct: 116 ITEHEKTCPHAPCFCPEPGCG 136
>02_01_0039 - 271926-273503
Length = 525
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -1
Query: 199 FRCTTGETLGSGADKGCCYQCPEYFAYQH 113
FR + +KG C+ CPE F+ H
Sbjct: 263 FRRLLAAEMAERREKGLCFNCPEKFSKDH 291
>01_01_1161 +
9244628-9245748,9247696-9247828,9248233-9248448,
9249802-9249957,9250788-9250979,9251118-9251234,
9251822-9252193
Length = 768
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 153 PLSAPLPRVSPVVHRNIPVGKLGRHSNRVMRSFEGKQ 263
PL +P P SP HR + +L R S RV RS G +
Sbjct: 247 PLPSPSPSTSPRTHRAGSILRL-RLSTRVQRSSGGSK 282
>01_06_1615 -
38652493-38652668,38652896-38653043,38653125-38653340,
38653572-38653701,38653801-38653823,38654238-38654292,
38654370-38654428,38654516-38654569
Length = 286
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 147 QQPLSAPLPRVSPVVHRN 200
Q P S PLPR+S V RN
Sbjct: 119 QLPKSLPLPRISAAVERN 136
>01_06_0716 - 31425189-31426460
Length = 423
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2
Query: 45 NLENHQPHHWKCLNI 1
NL PHHW C N+
Sbjct: 188 NLSGFLPHHWHCPNL 202
>01_05_0658 - 24043655-24043945,24044003-24044257,24044359-24044530,
24044617-24044844,24045688-24045821,24045908-24045991,
24046202-24046492,24046571-24046903,24047002-24047246,
24047476-24047742,24048305-24048465,24048556-24048872,
24048966-24049247,24049325-24049626,24049699-24049789,
24049881-24049934,24050028-24050104,24050192-24050367,
24051331-24051540,24051626-24052029
Length = 1457
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 201 IPVGKLGRHSNRVMRSFEGKQ 263
I VG LG HS+ +++ FEG Q
Sbjct: 1081 IYVGPLGHHSSELIKYFEGIQ 1101
>08_02_1267 +
25728324-25728407,25728436-25728502,25728753-25728828,
25729388-25729450,25729640-25729896,25731299-25731440,
25731524-25732017,25732398-25732536,25733805-25733876,
25733960-25734040,25734677-25734843,25734942-25735147,
25735301-25735427,25735515-25735639
Length = 699
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 259 LPSNDLITRFECLPNFPTGIFRCTTGETLGSGAD 158
L DL R+ + FP G C T ++L G D
Sbjct: 152 LQQTDLARRYSTIRFFPNGTRNCYTFKSLTPGLD 185
>07_03_0396 + 17672009-17672339,17672408-17673087
Length = 336
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +3
Query: 165 PLPRVSPVVHRNIPVGKLGRHSNRVMRSFEGKQW 266
PLPR + VHR V +NR + QW
Sbjct: 215 PLPRAAKAVHRCSQVTSTAHDTNRQLNVQPPPQW 248
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,177,252
Number of Sequences: 37544
Number of extensions: 157407
Number of successful extensions: 388
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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