Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16f15
(313 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U07807-1|AAA20232.1| 62|Homo sapiens metallothionein IV protein. 29 3.8
BC113444-1|AAI13445.1| 62|Homo sapiens metallothionein 4 protein. 29 3.8
BC113442-1|AAI13443.1| 62|Homo sapiens metallothionein 4 protein. 29 3.8
X55077-1|CAA38905.1| 591|Homo sapiens alpha-2 macroglobulin rec... 28 5.0
X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec... 28 5.0
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein... 28 5.0
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re... 28 5.0
AB209498-1|BAD92735.1| 2359|Homo sapiens low density lipoprotein... 28 5.0
BC150191-1|AAI50192.1| 431|Homo sapiens keratin 40 protein. 28 6.7
BC150174-1|AAI50175.1| 431|Homo sapiens keratin 40 protein. 28 6.7
BC130396-1|AAI30397.1| 431|Homo sapiens keratin 40 protein. 28 6.7
AK093919-1|BAC04250.1| 247|Homo sapiens protein ( Homo sapiens ... 28 6.7
AJ786658-1|CAH10353.1| 431|Homo sapiens Ka36 protein protein. 28 6.7
>U07807-1|AAA20232.1| 62|Homo sapiens metallothionein IV protein.
Length = 62
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/58 (32%), Positives = 22/58 (37%)
Frame = -1
Query: 307 SFNICLK*NCRKYGHCLPSNDLITRFECLPNFPTGIFRCTTGETLGSGADKGCCYQCP 134
S IC+ C C N R C P P G +C G G+DK C CP
Sbjct: 10 SGGICM---CGDNCKCTTCNCKTCRKSCCPCCPPGCAKCARGCICKGGSDKCSC--CP 62
>BC113444-1|AAI13445.1| 62|Homo sapiens metallothionein 4 protein.
Length = 62
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/58 (32%), Positives = 22/58 (37%)
Frame = -1
Query: 307 SFNICLK*NCRKYGHCLPSNDLITRFECLPNFPTGIFRCTTGETLGSGADKGCCYQCP 134
S IC+ C C N R C P P G +C G G+DK C CP
Sbjct: 10 SGGICM---CGDNCKCTTCNCKTCRKSCCPCCPPGCAKCARGCICKGGSDKCSC--CP 62
>BC113442-1|AAI13443.1| 62|Homo sapiens metallothionein 4 protein.
Length = 62
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/58 (32%), Positives = 22/58 (37%)
Frame = -1
Query: 307 SFNICLK*NCRKYGHCLPSNDLITRFECLPNFPTGIFRCTTGETLGSGADKGCCYQCP 134
S IC+ C C N R C P P G +C G G+DK C CP
Sbjct: 10 SGGICM---CGDNCKCTTCNCKTCRKSCCPCCPPGCAKCARGCICKGGSDKCSC--CP 62
>X55077-1|CAA38905.1| 591|Homo sapiens alpha-2 macroglobulin
receptor protein.
Length = 591
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -1
Query: 262 CLPSNDLITRFE-CLPNFPTGIFRCTTGETLGSGADKGCC 146
CLPS T C+P GIFRC + G G D+ C
Sbjct: 139 CLPSQFKCTNTNRCIP----GIFRCNGQDNCGDGEDERDC 174
>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related precursor
(AA -19 to 4525) protein.
Length = 4544
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -1
Query: 262 CLPSNDLITRFE-CLPNFPTGIFRCTTGETLGSGADKGCC 146
CLPS T C+P GIFRC + G G D+ C
Sbjct: 3413 CLPSQFKCTNTNRCIP----GIFRCNGQDNCGDGEDERDC 3448
>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
lipoprotein-related protein 1 (alpha-2-macroglobulin
receptor) protein.
Length = 4544
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -1
Query: 262 CLPSNDLITRFE-CLPNFPTGIFRCTTGETLGSGADKGCC 146
CLPS T C+P GIFRC + G G D+ C
Sbjct: 3413 CLPSQFKCTNTNRCIP----GIFRCNGQDNCGDGEDERDC 3448
>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-related
protein protein.
Length = 4544
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -1
Query: 262 CLPSNDLITRFE-CLPNFPTGIFRCTTGETLGSGADKGCC 146
CLPS T C+P GIFRC + G G D+ C
Sbjct: 3413 CLPSQFKCTNTNRCIP----GIFRCNGQDNCGDGEDERDC 3448
>AB209498-1|BAD92735.1| 2359|Homo sapiens low density
lipoprotein-related protein 1 variant protein.
Length = 2359
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -1
Query: 262 CLPSNDLITRFE-CLPNFPTGIFRCTTGETLGSGADKGCC 146
CLPS T C+P GIFRC + G G D+ C
Sbjct: 1229 CLPSQFKCTNTNRCIP----GIFRCNGQDNCGDGEDERDC 1264
>BC150191-1|AAI50192.1| 431|Homo sapiens keratin 40 protein.
Length = 431
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Frame = -1
Query: 313 DCSFNICLK*NCRKYGHCLPSNDLITRFECLPNFPTGIFRCTTGETLG-SGADKGCCYQC 137
DCS C +C C P++ CLP RC T L S GC C
Sbjct: 4 DCSSTHCSPESCGTASGCAPASSCSVETACLPG-TCATSRCQTPSFLSRSRGLTGCLLPC 62
>BC150174-1|AAI50175.1| 431|Homo sapiens keratin 40 protein.
Length = 431
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Frame = -1
Query: 313 DCSFNICLK*NCRKYGHCLPSNDLITRFECLPNFPTGIFRCTTGETLG-SGADKGCCYQC 137
DCS C +C C P++ CLP RC T L S GC C
Sbjct: 4 DCSSTHCSPESCGTASGCAPASSCSVETACLPG-TCATSRCQTPSFLSRSRGLTGCLLPC 62
>BC130396-1|AAI30397.1| 431|Homo sapiens keratin 40 protein.
Length = 431
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Frame = -1
Query: 313 DCSFNICLK*NCRKYGHCLPSNDLITRFECLPNFPTGIFRCTTGETLG-SGADKGCCYQC 137
DCS C +C C P++ CLP RC T L S GC C
Sbjct: 4 DCSSTHCSPESCGTASGCAPASSCSVETACLPG-TCATSRCQTPSFLSRSRGLTGCLLPC 62
>AK093919-1|BAC04250.1| 247|Homo sapiens protein ( Homo sapiens
cDNA FLJ36600 fis, clone TRACH2014950, moderately
similar to KERATIN, TYPE I CUTICULAR HA6. ).
Length = 247
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Frame = -1
Query: 313 DCSFNICLK*NCRKYGHCLPSNDLITRFECLPNFPTGIFRCTTGETLG-SGADKGCCYQC 137
DCS C +C C P++ CLP RC T L S GC C
Sbjct: 4 DCSSTHCSPESCGTASGCAPASSCSVETACLPG-ACATSRCQTPSFLSRSRGLTGCLLPC 62
>AJ786658-1|CAH10353.1| 431|Homo sapiens Ka36 protein protein.
Length = 431
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Frame = -1
Query: 313 DCSFNICLK*NCRKYGHCLPSNDLITRFECLPNFPTGIFRCTTGETLG-SGADKGCCYQC 137
DCS C +C C P++ CLP RC T L S GC C
Sbjct: 4 DCSSTHCSPESCGTASGCAPASSCSVETACLPG-TCATSRCQTPSFLSRSRGLTGCLLPC 62
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,879,241
Number of Sequences: 237096
Number of extensions: 863904
Number of successful extensions: 1659
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1659
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1459139350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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