Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f14
         (818 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0970 + 7664552-7664570,7664696-7664733,7665661-7666510,766...    30   1.9  
10_08_0771 + 20463872-20465113                                         29   4.4  

>01_01_0970 +
           7664552-7664570,7664696-7664733,7665661-7666510,
           7666608-7666699
          Length = 332

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 811 IMAXVTXQKV-HITPRTVVSGMEKATASREDTRDAVEELLEEQHAVRLGLPALNTTQGD 638
           I+A  T +++  + PR V SG+ KA  +R    D  +    E   V  GLP L   + D
Sbjct: 238 ILAGCTAKRLLALAPRLVESGLLKAVTTRHIAADEAKRCSAEMAFVGSGLPVLPIVEWD 296


>10_08_0771 + 20463872-20465113
          Length = 413

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 713 VPCILPGSRCLLHTAHDRSRRDVHLLTRHR 802
           V C++P + C L  AHD  RR +   TR R
Sbjct: 10  VLCLIPPTMCSLAAAHDDLRRGLEQATRGR 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,961,036
Number of Sequences: 37544
Number of extensions: 274276
Number of successful extensions: 528
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)