Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f14
         (818 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025464-8|AAB71019.1|  714|Caenorhabditis elegans Hypothetical ...    36   0.026
AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine re...    29   5.3  

>AF025464-8|AAB71019.1|  714|Caenorhabditis elegans Hypothetical
           protein F53G2.1 protein.
          Length = 714

 Score = 36.3 bits (80), Expect = 0.026
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = -2

Query: 211 TQLQIANISKYRFYLI*IIQNMPKLILISL-DYNIRSLFSFFYENYQHVIPVNIKKANFY 35
           T L I   + Y+   + + QN PKLI + + D N++ LF   Y    H+  + ++   F 
Sbjct: 150 TTLSIRGRTLYKKEFLVVCQNFPKLISLDISDTNVQLLFGISY--LIHLRELTMQNLTFL 207

Query: 34  SFFIFIEMF 8
           S F+++++F
Sbjct: 208 SHFVWLDLF 216


>AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 66 protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 139 LILISLDYNIRSLFSFFYENYQHVIPV 59
           ++LI+LD  + S F  FY N++  IP+
Sbjct: 99  VLLITLDRVVASFFPIFYHNHRRRIPI 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,588,156
Number of Sequences: 27780
Number of extensions: 273055
Number of successful extensions: 574
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)