Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f13
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    30   0.34 
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    29   0.79 
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    27   4.2  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      26   5.5  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   5.5  
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch...    25   9.7  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   9.7  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   9.7  

>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -2

Query: 754  CMQTVCNKNG-LQCQGVCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPDCASVE 593
            C Q     +G +QC   C  W HY C+    G   DI + L      CPDC S E
Sbjct: 1459 CRQPFAISDGTVQCHN-CLEWFHYECV----GLSSDIVSTLSNY--ACPDCCSKE 1506



 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 724  LQCQGVCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPD 608
            ++C+ +C  W H  C+K +  K++  +    K ICP  D
Sbjct: 1185 IECE-LCHEWYHAKCMKMSKKKLRADE----KFICPICD 1218


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 127 VKSVSDSNIPSNNCQLFDALEEMCKTVGQLSVQLRD 20
           V+S +D++I   N  L  ALE M +T   L  QL+D
Sbjct: 670 VQSTNDAHIMQENFSLHKALEVMRETSSDLDKQLKD 705


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +1

Query: 22  LLVELIIVRQFYTFPLKHRRVDSCLKGYSNQILTSRHLVSDLARVINKNRI*TFVPKTTA 201
           LLV+  +V Q YT+P   ++V  CL  Y   I      ++ L        I +F+ + + 
Sbjct: 159 LLVDYSLVSQGYTYP---KQVRECLNVYQVLISKGFRNITVLGESAGGTLILSFLYQISE 215

Query: 202 VSPMMKKEW 228
           +S + K  W
Sbjct: 216 LSKLNKVVW 224


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 656 SGYQSWLNKNYLSMSRLCFGRAESQRKSSMQNEKK 552
           S Y +WLN +  +   +   R   Q++  M+N ++
Sbjct: 188 SQYDAWLNGSVSNKKSIAAAREAEQKRKEMENRRR 222


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 724  LQCQGVCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPD 608
            ++C+ +C  W H  CLK +  K++  +    K  CP  D
Sbjct: 1110 IECE-ICHEWYHAKCLKMSKKKLRQDE----KFTCPICD 1143


>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 211

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -2

Query: 148 PNQKPNAVKSV---SDSNIPSNNCQLFDALEEMCKTVG 44
           P  +P+ V  V    D     N  +LFD L+E+CK  G
Sbjct: 10  PKAQPHKVPCVYLAGDLVFRPNAIELFDELKEICKDAG 47


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 159 KQEQDLDICAENDGSEPDDE 218
           K++ D D+C END SE D +
Sbjct: 472 KEDND-DLCTENDSSEGDSD 490


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 396 GLTQGGFGPHGMLWSDSADSEE 461
           GL   G+GPH  +W D+  +++
Sbjct: 318 GLLAVGWGPHATIWKDALRTKQ 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,419,787
Number of Sequences: 5004
Number of extensions: 72078
Number of successful extensions: 224
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)