Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16f13
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0459 - 3637741-3637995,3638078-3638204,3641273-3641495,364... 38 0.013
02_04_0268 + 21435231-21435240,21435330-21435558,21435778-214358... 38 0.013
07_01_0891 - 7447079-7447330,7447431-7447554,7449571-7449793,744... 36 0.051
03_06_0465 - 34130083-34130340,34130421-34130541,34131158-341311... 36 0.051
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624... 34 0.15
05_04_0339 + 20397591-20397627,20398494-20398526,20399210-203994... 34 0.15
01_06_1602 - 38559661-38559936,38560008-38560137,38562550-385627... 33 0.36
04_04_0015 + 22164889-22165000,22165135-22165167,22165992-221662... 32 0.47
06_01_0878 + 6735266-6735340,6735946-6736041,6738610-6738720,673... 31 1.1
12_02_1174 - 26696869-26698191 31 1.4
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 30 2.5
04_04_0998 - 29996117-29996242,29996345-29996486,29996613-299968... 30 2.5
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 29 3.3
03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542 29 3.3
02_01_0242 + 1600567-1600870,1601209-1601219,1601233-1601319 29 3.3
08_02_0981 + 23266174-23266689,23268389-23268549,23269068-232693... 29 4.4
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 29 4.4
09_04_0506 - 18188785-18190599 28 7.7
01_06_1753 - 39664219-39665445 28 7.7
>05_01_0459 -
3637741-3637995,3638078-3638204,3641273-3641495,
3641592-3641624,3641716-3641854
Length = 258
Score = 37.5 bits (83), Expect = 0.013
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -2
Query: 709 VCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPDCASVEP 590
VC+RW H C+K TP K + IK CP C+S P
Sbjct: 223 VCERWYHGKCVKITPAKAESIKQ------YKCPSCSSKRP 256
>02_04_0268 +
21435231-21435240,21435330-21435558,21435778-21435898,
21435992-21436264
Length = 210
Score = 37.5 bits (83), Expect = 0.013
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 754 CMQTVCNKNGLQCQGVCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPDCAS 599
C +T N C VC++W H C++ TP K + IK CP C+S
Sbjct: 160 CGETYANGEFWICCDVCEKWFHGKCVRITPAKAEHIKQ------YKCPGCSS 205
>07_01_0891 -
7447079-7447330,7447431-7447554,7449571-7449793,
7449891-7449923,7450042-7450144
Length = 244
Score = 35.5 bits (78), Expect = 0.051
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 709 VCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPDCAS 599
+C+RW H C++ TP K + IK CPDC+S
Sbjct: 208 ICERWFHGKCVRITPAKAEHIKH------YKCPDCSS 238
>03_06_0465 -
34130083-34130340,34130421-34130541,34131158-34131186,
34132259-34132382,34132594-34132816,34132948-34132980,
34133106-34133208
Length = 296
Score = 35.5 bits (78), Expect = 0.051
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 709 VCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPDCAS 599
+C+RW H C++ TP K + IK CPDC+S
Sbjct: 258 ICERWFHGKCVRITPAKAEHIKH------YKCPDCSS 288
>07_03_1219 +
24960043-24960133,24960304-24960336,24962258-24962486,
24963183-24963309,24963530-24963869,24964806-24965095
Length = 369
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 718 CQGVCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPDCA 602
C +C++W H C+K TP K + IK CP C+
Sbjct: 227 CCDICEKWFHGKCVKITPAKAEHIKQ------YKCPSCS 259
>05_04_0339 +
20397591-20397627,20398494-20398526,20399210-20399438,
20402055-20402184,20402251-20402532
Length = 236
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 718 CQGVCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPDCAS 599
C C+RW H C+K TP + + IK CPDC +
Sbjct: 198 CCDSCERWYHGKCVKITPARAEHIKH------YKCPDCGN 231
>01_06_1602 -
38559661-38559936,38560008-38560137,38562550-38562778,
38563627-38563659,38563746-38563896
Length = 272
Score = 32.7 bits (71), Expect = 0.36
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 718 CQGVCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPDCAS 599
C C++W H C+K TP + + IK CPDC +
Sbjct: 234 CCDNCEKWYHGKCVKITPARAEHIKQ------YKCPDCTN 267
>04_04_0015 +
22164889-22165000,22165135-22165167,22165992-22166220,
22166709-22166826,22166910-22167188
Length = 256
Score = 32.3 bits (70), Expect = 0.47
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 754 CMQTVCNKNGLQCQGVCKRWAHYACLKYTPGKIQDIK 644
C + N C +C+ W H C++ TP K + IK
Sbjct: 206 CGEAYANGEFWICCDICETWFHGKCVRITPAKAEHIK 242
>06_01_0878 +
6735266-6735340,6735946-6736041,6738610-6738720,
6738816-6739309,6739422-6739587,6739666-6739789,
6739874-6739986,6740085-6740693,6743095-6743385,
6743845-6743913,6744099-6744188,6744281-6744696,
6744882-6744969
Length = 913
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 718 CQGVCKRWAHYACLKYTPGKIQDIKAGLIKIICPCPDC 605
C G+C R H CL P +DI G +CP DC
Sbjct: 334 CDGICDRGFHQYCLN-PPLLAEDIPQGDEGWLCPACDC 370
>12_02_1174 - 26696869-26698191
Length = 440
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 427 PCGPNPPCVSPKQTQNEPKCPPPSFKNPS 341
P P PP V P Q +P+ PPPS + PS
Sbjct: 162 PPPPRPPSVKPPVVQPKPQ-PPPSLQPPS 189
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 445 ESLHNIPCGPNPPCVSPKQTQNEPKCPPPSFKNPSVKHSCGP 320
+ LH+ P PP +P T P PPP+ + P H P
Sbjct: 49 QQLHSPDSPPPPPLPTPTVTTPTPPPPPPAPRPPRRHHRIPP 90
>04_04_0998 -
29996117-29996242,29996345-29996486,29996613-29996812,
29997112-29997497,29997769-29998318,29998949-29999296
Length = 583
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = -2
Query: 412 PPCVSP--KQTQNEPKCPPPSFKNPSV-KHSCGPDNQCVTRGSNAKVQQNEAKTKSRIVC 242
P CV + N +CP SF S K C P QC+T + +Q + R V
Sbjct: 380 PRCVIGCLEDEDNNAQCPKCSFFFCSFCKEPCHPRRQCLTPEEKLQRRQASGRMSEREVA 439
Query: 241 QEL 233
QE+
Sbjct: 440 QEI 442
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -2
Query: 436 HNIPCGPNPPCVSPKQTQNEPKCPPPS 356
H P P PP P TQ P PPP+
Sbjct: 44 HRAPSPPRPPPPPPPPTQPAPPPPPPA 70
>03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542
Length = 138
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -2
Query: 427 PCGPNPPCVSPKQTQNEPKCPPPSFKNPSVKHSCGPDNQC 308
P P P PK+ P CPPP +SC P QC
Sbjct: 76 PEAPKKPDDPPKKPDPPPPCPPPPPPCCPGCNSCRPACQC 115
>02_01_0242 + 1600567-1600870,1601209-1601219,1601233-1601319
Length = 133
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = -1
Query: 620 SMSRLCFGRAESQRKSSMQNEKKFRKAF*GLC*SFNKETKANTSGASSTVTMLLFRICRI 441
+MSR+C E ++N + F K F G C FN ++ A++ + CR+
Sbjct: 28 AMSRICRCYHECLPNCGLRNSRSFCKVFCGSCCVFNPVHNCTSTDAAAAAPAIAGDDCRM 87
>08_02_0981 +
23266174-23266689,23268389-23268549,23269068-23269309,
23270180-23270284,23270746-23270902,23271860-23272028,
23272598-23272638,23273151-23273216,23273524-23273779
Length = 570
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 181 MSRSCSCLSHEPNQKPNAVKSVSDSNIPSNNCQLFDALEEMCK 53
M+R CSC S +P+ + + + SNN DA+ C+
Sbjct: 438 MNRPCSCSSKRGKVRPSHLSNSREDACSSNNRGFMDAVMVRCR 480
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = -2
Query: 427 PCGPNPPCVSPKQTQNEPKCPPPSFKNPSVKHSCGPDNQCVTRGS-NAKVQQNEAKTK 257
P PP SP EP PPPS P + + TR + ++ +QN + K
Sbjct: 164 PSPTGPPTPSPTNPNLEPSPPPPSSSAPPSRTPSNSSDGPTTRDNISSSKKQNSSTLK 221
>09_04_0506 - 18188785-18190599
Length = 604
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 342 EGFLKDGGGHFGSF*VCFGLTQGGFGPHG 428
+GF + GGG++G + G GG GP G
Sbjct: 156 DGFHRQGGGNYGGGPIVVGNGGGGDGPGG 184
>01_06_1753 - 39664219-39665445
Length = 408
Score = 28.3 bits (60), Expect = 7.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 153 CDKQEQDLDICAENDGSEPDDEEGMG 230
C++++ D D C ++D E DD++ G
Sbjct: 301 CEEEDSDEDDCEDDDDDESDDDDDDG 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,033,521
Number of Sequences: 37544
Number of extensions: 478906
Number of successful extensions: 1755
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1745
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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