Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f13
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n...    36   0.026
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    34   0.14 
Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical pr...    31   0.74 
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   4.0  
AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical...    29   4.0  
AC084159-11|ABO16465.1|  449|Caenorhabditis elegans F-box a prot...    29   4.0  
AF039046-14|AAB94214.1|  388|Caenorhabditis elegans Prion-like-(...    29   5.2  
Z81454-4|CAD89725.1|  483|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical pr...    28   9.1  
AL110484-22|CAB54414.2|  305|Caenorhabditis elegans Hypothetical...    28   9.1  

>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
           isoform a protein.
          Length = 1702

 Score = 36.3 bits (80), Expect = 0.026
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = -2

Query: 430 IPCGPNPPCVSPKQTQ-NEPKCPPPSFKNPSVKHSCGPD--NQCVTRGSNAKV 281
           +P  P+ P  S  ++Q    K  P +FK   ++HS  PD  N+CV+  SNA +
Sbjct: 620 VPMNPSLPVSSHSESQVRSTKKLPSNFKEDDIRHSTCPDNCNKCVSEKSNADI 672


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
 Frame = -2

Query: 424 CGPNP---PCVSPKQTQNEPKCPPPSFKNPS----VKHSCGPDNQC 308
           CGP+P   PC  P      P CPPP    PS     K +  P+N C
Sbjct: 100 CGPSPVPAPCCPPPPAPAAPCCPPPPPPTPSPLVCCKQAPVPENPC 145


>Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical protein
            ZK593.4 protein.
          Length = 1477

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 730  NGLQCQGVCKRWAHYACLKYTPGKIQDI 647
            N + C+  CK W H  CL +T  +I D+
Sbjct: 1428 NWVMCEAGCKNWFHVICLGFTLREINDM 1455


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 430 IPCGPNPPCVSPKQTQNEPKCPPPS--FKNPSVKH 332
           +P  P+    +P+Q Q +P  PPP   +++P+ +H
Sbjct: 30  VPPAPDASMPTPQQQQQQPNLPPPQQPYEHPAQQH 64


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -2

Query: 424 CGPNPPCVSPKQTQNEPKCPPPSFKNPS 341
           C P P C  P      P CPPP    PS
Sbjct: 56  CPPPPMCPPPPPPPPPPMCPPPPPPMPS 83



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 430 IPCGPNPPCVSPKQTQNEPKCPPP 359
           +PC P PP   P+     P CPPP
Sbjct: 43  LPCPP-PPICPPQFCPPPPMCPPP 65


>AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical
           protein F32D1.7 protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 427 PCGPNPPCVSPKQTQNEPKCPPPS 356
           P    PP  SPK  +N+P  P PS
Sbjct: 256 PSSKQPPKKSPKSNKNDPNAPGPS 279


>AC084159-11|ABO16465.1|  449|Caenorhabditis elegans F-box a protein
           protein 221 protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 145 NQKPNAVKSVSDSNIPSNNCQLFDALEEM 59
           +++P  V  +SDS +    C LFDAL E+
Sbjct: 58  DKRPRKVIHISDSQVAMRACILFDALNEI 86


>AF039046-14|AAB94214.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 54
           protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -2

Query: 412 PPCVSPKQTQNEPKCPPPSFKNPSVKHSCGPDNQCVTRGSNAKVQQNEAKTKSRIVCQE 236
           P C    Q+Q  P   PP+   P+    C P   C  +  +  VQQ +  ++ +  CQ+
Sbjct: 104 PQCQQQCQSQCAPMYNPPATTTPAPVVQCQP--MCQQQCQSTCVQQQQPASQCQPQCQQ 160


>Z81454-4|CAD89725.1|  483|Caenorhabditis elegans Hypothetical
           protein B0391.6 protein.
          Length = 483

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 139 KPNAVKSVSDSNIPSNNCQLFDALEEM 59
           +P  V  +SDS +    C LFDAL E+
Sbjct: 94  RPRKVIHISDSQVAMRACILFDALNEI 120


>Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical
           protein F26H11.4 protein.
          Length = 739

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -2

Query: 433 NIPCGPNPPCVSPKQTQNEPK-CPPPSFKNPSV--KHS 329
           ++PC P PP +S ++    PK C  P+ KN S   KHS
Sbjct: 183 SLPCPPPPPPLSERKKNVGPKPCVGPAQKNLSSQRKHS 220


>AL110484-22|CAB54414.2|  305|Caenorhabditis elegans Hypothetical
           protein Y38E10A.22 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/63 (22%), Positives = 26/63 (41%)
 Frame = -2

Query: 427 PCGPNPPCVSPKQTQNEPKCPPPSFKNPSVKHSCGPDNQCVTRGSNAKVQQNEAKTKSRI 248
           P  P PPC    +   EPK  P   K  + K     D +        ++++++ + +  I
Sbjct: 209 PQPPQPPCHKANKNA-EPKKEPEPAKKVAPKQETKVDQEAAELARKIQIEEDKTRKRHEI 267

Query: 247 VCQ 239
           V +
Sbjct: 268 VAR 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,416,427
Number of Sequences: 27780
Number of extensions: 432959
Number of successful extensions: 1533
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)