Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f12
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    30   0.47 
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    30   0.47 
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    27   2.5  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    27   4.4  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    26   5.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   7.7  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +2

Query: 35  PRCLRSLTTYWRENLSRE 88
           PR LRSLTT W E+LS E
Sbjct: 96  PRGLRSLTTVWAEHLSEE 113


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +2

Query: 35  PRCLRSLTTYWRENLSRE 88
           PR LRSLTT W E+LS E
Sbjct: 96  PRGLRSLTTVWAEHLSEE 113


>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 457 SICLALSVVMTVTASCVVWYTLLTKSPTAALS 552
           SIC ++SVV+++     VW  LL KS   ++S
Sbjct: 190 SICFSVSVVVSLIGLLGVWQKLLPKSNVYSVS 221


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 628 PETTLAAIITNVTTGRSTPSRAGGPDSRRRSGTS 527
           P T+++A +++V T  +T S      S  RSG+S
Sbjct: 511 PSTSMSASLSSVHTSSATSSSKSSSSSSSRSGSS 544


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 779 QNNITKSCADLYKSAENITKLVKSSVTRLLGTKECPKQSSECK 651
           Q+N   S A+LY S  N +  V  S++R   T +  K SS C+
Sbjct: 167 QHNGHNSQAELYASKWNHSAPVIVSISRFSSTDQILKDSSFCE 209


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 355 SVSAFLKNLKPELVSAGLLSLMIVQSSDFDFLNFSICLALSVVMT 489
           +VS   ++LK  L  AGL +L +V+     F N  + L  S+V+T
Sbjct: 91  TVSERAEHLKNLLFDAGLSNLPLVELGGNVFFNSHVPLPCSLVLT 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,189
Number of Sequences: 5004
Number of extensions: 42328
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)