Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f12
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561     29   4.7  
04_03_0987 - 21460169-21460467,21460934-21461495,21462756-214631...    29   4.7  
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920...    29   4.7  
08_02_1560 - 27876886-27877905                                         29   6.2  
02_04_0184 - 20737884-20738179,20738611-20739169,20740009-207404...    29   6.2  
07_03_1744 + 29171372-29171438,29172789-29173768                       28   8.1  
06_03_0147 + 17236158-17236808                                         28   8.1  
03_02_0461 - 8658494-8658876,8659791-8659859,8661746-8662187           28   8.1  

>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
          Length = 495

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 485 ITTESAKQIEKFRKSKSDDCTIIKESKPAETSSG-FKFFKKAETEGKK 345
           +  +   ++ +   +  ++  ++  SKP++  SG +K  KK + EGKK
Sbjct: 207 VEDKGKSKVNEANDNLEEEIALLARSKPSKKKSGGYKLMKKLKKEGKK 254


>04_03_0987 -
           21460169-21460467,21460934-21461495,21462756-21463190,
           21463757-21464185
          Length = 574

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 346 FLPSVSAFLKNLKPELVSAGLLSLMIVQ 429
           F+PS  AFL N +PE+V   LL  +++Q
Sbjct: 149 FVPSALAFLMNGEPEIVKNFLLKTLLLQ 176


>01_01_1157 -
           9203448-9203560,9204725-9204768,9205345-9205433,
           9205565-9205609,9205805-9205912,9206003-9206088,
           9206492-9206579,9206725-9206910,9207181-9207256,
           9207332-9207381,9207715-9207777,9207882-9207962,
           9208028-9208130,9208246-9208348,9208489-9208549,
           9209059-9209154,9209185-9209225,9209848-9209922,
           9210412-9210562
          Length = 552

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 130 VDLMVANTLPDAGITSGLSSCETSRGGVGTSCGELRPLSRELIIETLE 273
           + +++ NTL   G++S      TSRG +G  CG L P+    +I   +
Sbjct: 174 ISIIIFNTL--FGLSSSYWMALTSRGLLGLMCGILGPIKHYFLISVFQ 219


>08_02_1560 - 27876886-27877905
          Length = 339

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +3

Query: 402 GLTFFDDSAVIRFRFSEFFNL-FSALGGDDGHRVVCGLVHFTHEVPDRRLESGPPARLGV 578
           G  ++D S    +RF       FSA+G   GH V      F  E      ++ P    GV
Sbjct: 139 GRAYYDFSPFPGYRFVVLDAYDFSAVGWPRGHPVAAAARRFLDERNPNADKNSPSGLAGV 198

Query: 579 DRPVVTF 599
           DR  V F
Sbjct: 199 DRRFVMF 205


>02_04_0184 -
           20737884-20738179,20738611-20739169,20740009-20740440,
           20740556-20740957
          Length = 562

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 346 FLPSVSAFLKNLKPELVSAGLLSLMIVQ 429
           F+PS  AFL N +PE+V   LL  +++Q
Sbjct: 140 FVPSALAFLMNGEPEIVRHFLLKTLLLQ 167


>07_03_1744 + 29171372-29171438,29172789-29173768
          Length = 348

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +3

Query: 411 FFDDSAVIRFRFSEFFNL-FSALGGDDGHRVVCGLVHFTHEVPDRRLESGPPARLGVDRP 587
           ++D S    +RF       FSALG    H V    + F  E      ++ P   +GVDR 
Sbjct: 159 YYDFSPCPEYRFVVLDAYDFSALGWPRDHPVTAEAMKFLEEKNPNSDKNSPDGLVGVDRR 218

Query: 588 VVTF 599
            V F
Sbjct: 219 FVMF 222


>06_03_0147 + 17236158-17236808
          Length = 216

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 294 EARRQGGLQRLYDEFSAERSQLSARRAHAAPGRLARA 184
           EAR  G L+ LY   SAE   + A R  A PG   R+
Sbjct: 134 EARELGELEALYPCLSAEVEAVEASRLCAVPGVFRRS 170


>03_02_0461 - 8658494-8658876,8659791-8659859,8661746-8662187
          Length = 297

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 249 SAERSQLSARRAHAAPGRLARAEAGRDARVG 157
           +AER +L ARR  A  GR  R +   +A VG
Sbjct: 3   TAERRRLRARRTGAGGGRRRRGDGREEAAVG 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,340,796
Number of Sequences: 37544
Number of extensions: 328278
Number of successful extensions: 1313
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)